Analysis of interatomic Contacts of Structural Units in PDB entry:
8D45


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D45 entry

There are 4 chains in PDB entry 8D45 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 9GLY 372
B
 ALA 9GLY 372
C
 ALA 9GLY 372
D
 ALA 9GLY 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 8D45. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 20Right-handed alpha
Helix 2
AA2
A
28 36Right-handed alpha
Helix 3
AA3
A
47 52Right-handed alpha
Helix 4
AA4
A
52 67Right-handed alpha
Helix 5
AA5
A
96 113Right-handed alpha
Helix 6
AA6
A
134 152Right-handed alpha
Helix 7
AA7
A
163 176Right-handed alpha
Helix 8
AA8
A
197 209Right-handed alpha
Helix 9
AA9
A
220 239Right-handed alpha
Helix 10
AB1
A
260 264Right-handed 310
Helix 11
AB2
A
277 292Right-handed alpha
Helix 12
AB3
A
303 319Right-handed alpha
Helix 13
AB4
A
322 328Right-handed 310
Helix 14
AB5
A
332 338Right-handed 310
Helix 15
AB6
A
340 346Right-handed alpha
Helix 16
AB7
A
348 354Right-handed alpha
Helix 17
AB8
B
12 20Right-handed alpha
Helix 18
AB9
B
28 33Right-handed alpha
Helix 19
AC1
B
47 52Right-handed alpha
Helix 20
AC2
B
52 67Right-handed alpha
Helix 21
AC3
B
96 112Right-handed alpha
Helix 22
AC4
B
134 151Right-handed alpha
Helix 23
AC5
B
163 176Right-handed alpha
Helix 24
AC6
B
197 209Right-handed alpha
Helix 25
AC7
B
222 239Right-handed alpha
Helix 26
AC8
B
277 292Right-handed alpha
Helix 27
AC9
B
303 319Right-handed alpha
Helix 28
AD1
B
322 328Right-handed 310
Helix 29
AD2
B
332 338Right-handed 310
Helix 30
AD3
B
340 346Right-handed alpha
Helix 31
AD4
B
348 355Right-handed alpha
Helix 32
AD5
C
12 19Right-handed alpha
Helix 33
AD6
C
28 36Right-handed alpha
Helix 34
AD7
C
47 52Right-handed alpha
Helix 35
AD8
C
52 67Right-handed alpha
Helix 36
AD9
C
96 113Right-handed alpha
Helix 37
AE1
C
134 152Right-handed alpha
Helix 38
AE2
C
163 176Right-handed alpha
Helix 39
AE3
C
197 209Right-handed alpha
Helix 40
AE4
C
222 238Right-handed alpha
Helix 41
AE5
C
279 292Right-handed alpha
Helix 42
AE6
C
303 319Right-handed alpha
Helix 43
AE7
C
322 328Right-handed 310
Helix 44
AE8
C
332 336Right-handed 310
Helix 45
AE9
C
340 346Right-handed alpha
Helix 46
AF1
C
348 355Right-handed alpha
Helix 47
AF2
D
12 20Right-handed alpha
Helix 48
AF3
D
28 33Right-handed alpha
Helix 49
AF4
D
47 52Right-handed alpha
Helix 50
AF5
D
52 67Right-handed alpha
Helix 51
AF6
D
96 112Right-handed alpha
Helix 52
AF7
D
134 152Right-handed alpha
Helix 53
AF8
D
163 176Right-handed alpha
Helix 54
AF9
D
197 209Right-handed alpha
Helix 55
AG1
D
220 238Right-handed alpha
Helix 56
AG2
D
259 264Right-handed 310
Helix 57
AG3
D
277 292Right-handed alpha
Helix 58
AG4
D
303 319Right-handed alpha
Helix 59
AG5
D
322 328Right-handed 310
Helix 60
AG6
D
332 338Right-handed 310
Helix 61
AG7
D
340 345Right-handed alpha
Helix 62
AG8
D
348 355Right-handed alpha
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There are 4 sheets in PDB entry 8D45. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
156 159parallel
Strand 3
A
181 185parallel
Strand 4
A
212 216parallel
Strand 5
A
243 247parallel
Strand 6
A
295 296parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
117 122parallel
Strand 3
B
155 158parallel
Strand 4
B
181 185parallel
Strand 5
B
212 216parallel
Strand 6
B
243 247parallel
Strand 7
B
295 296parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 72first strand
Strand 2
C
117 122parallel
Strand 3
C
155 161parallel
Strand 4
C
181 185parallel
Strand 5
C
212 216parallel
Strand 6
C
243 247parallel
Strand 7
C
295 296parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
70 72first strand
Strand 2
D
117 123parallel
Strand 3
D
155 159parallel
Strand 4
D
181 185parallel
Strand 5
D
212 216parallel
Strand 6
D
243 247parallel
Strand 7
D
295 296parallel
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