Analysis of interatomic Contacts of Structural Units in PDB entry:
8D46

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D46 entry

There are 4 chains in PDB entry 8D46 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 17	SER 501
C	LEU 9	SER 501
D	LEU 9	SER 501
B	LYS 17	SER 501

There are 67 helices in PDB entry 8D46. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	71	Right-handed alpha
Helix 2	AA2	A	81	99	Right-handed alpha
Helix 3	AA3	A	99	112	Right-handed alpha
Helix 4	AA4	A	114	121	Right-handed alpha
Helix 5	AA5	A	121	136	Right-handed alpha
Helix 6	AA6	A	171	187	Right-handed alpha
Helix 7	AA7	A	199	213	Right-handed alpha
Helix 8	AA8	A	228	236	Right-handed alpha
Helix 9	AA9	A	247	261	Right-handed alpha
Helix 10	AB1	A	283	297	Right-handed alpha
Helix 11	AB2	A	298	301	Right-handed 310
Helix 12	AB3	A	312	330	Right-handed alpha
Helix 13	AB4	A	347	364	Right-handed alpha
Helix 14	AB5	A	394	399	Right-handed alpha
Helix 15	AB6	A	413	422	Right-handed alpha
Helix 16	AB7	A	436	447	Right-handed alpha
Helix 17	AB8	A	479	483	Right-handed 310
Helix 18	AB9	C	56	71	Right-handed alpha
Helix 19	AC1	C	75	80	Right-handed alpha
Helix 20	AC2	C	81	99	Right-handed alpha
Helix 21	AC3	C	99	112	Right-handed alpha
Helix 22	AC4	C	114	121	Right-handed alpha
Helix 23	AC5	C	121	137	Right-handed alpha
Helix 24	AC6	C	171	186	Right-handed alpha
Helix 25	AC7	C	199	213	Right-handed alpha
Helix 26	AC8	C	228	236	Right-handed alpha
Helix 27	AC9	C	247	261	Right-handed alpha
Helix 28	AD1	C	283	297	Right-handed alpha
Helix 29	AD2	C	315	329	Right-handed alpha
Helix 30	AD3	C	347	365	Right-handed alpha
Helix 31	AD4	C	394	398	Right-handed 310
Helix 32	AD5	C	413	423	Right-handed alpha
Helix 33	AD6	C	437	447	Right-handed alpha
Helix 34	AD7	C	479	485	Right-handed alpha
Helix 35	AD8	D	56	71	Right-handed alpha
Helix 36	AD9	D	75	80	Right-handed alpha
Helix 37	AE1	D	81	99	Right-handed alpha
Helix 38	AE2	D	99	112	Right-handed alpha
Helix 39	AE3	D	114	121	Right-handed alpha
Helix 40	AE4	D	121	137	Right-handed alpha
Helix 41	AE5	D	171	187	Right-handed alpha
Helix 42	AE6	D	199	213	Right-handed alpha
Helix 43	AE7	D	228	236	Right-handed alpha
Helix 44	AE8	D	247	261	Right-handed alpha
Helix 45	AE9	D	283	297	Right-handed alpha
Helix 46	AF1	D	315	329	Right-handed alpha
Helix 47	AF2	D	347	365	Right-handed alpha
Helix 48	AF3	D	394	398	Right-handed 310
Helix 49	AF4	D	413	422	Right-handed alpha
Helix 50	AF5	D	437	447	Right-handed alpha
Helix 51	AF6	D	479	486	Right-handed alpha
Helix 52	AF7	B	56	71	Right-handed alpha
Helix 53	AF8	B	81	99	Right-handed alpha
Helix 54	AF9	B	99	112	Right-handed alpha
Helix 55	AG1	B	114	121	Right-handed alpha
Helix 56	AG2	B	121	136	Right-handed alpha
Helix 57	AG3	B	171	187	Right-handed alpha
Helix 58	AG4	B	199	213	Right-handed alpha
Helix 59	AG5	B	228	236	Right-handed alpha
Helix 60	AG6	B	247	261	Right-handed alpha
Helix 61	AG7	B	283	297	Right-handed alpha
Helix 62	AG8	B	298	301	Right-handed 310
Helix 63	AG9	B	312	330	Right-handed alpha
Helix 64	AH1	B	347	364	Right-handed alpha
Helix 65	AH2	B	394	399	Right-handed alpha
Helix 66	AH3	B	413	422	Right-handed alpha
Helix 67	AH4	B	436	447	Right-handed alpha

There are 19 sheets in PDB entry 8D46. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	25	first strand
Strand 2	A	28	30	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	41	first strand
Strand 2	A	48	53	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	145	first strand
Strand 2	A	151	159	anti-parallel
Strand 3	A	487	495	anti-parallel
Strand 4	B	451	454	parallel
Strand 5	B	429	433	parallel
Strand 6	B	275	278	parallel
Strand 7	B	308	311	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	221	first strand
Strand 2	A	189	194	parallel
Strand 3	A	162	167	parallel
Strand 4	A	241	245	parallel
Strand 5	A	265	269	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	311	first strand
Strand 2	A	275	278	parallel
Strand 3	A	430	433	parallel
Strand 4	A	451	454	parallel
Strand 5	B	487	495	parallel
Strand 6	B	151	159	anti-parallel
Strand 7	B	144	145	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	386	first strand
Strand 2	A	405	406	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	25	first strand
Strand 2	C	28	30	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	41	first strand
Strand 2	C	48	53	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	145	first strand
Strand 2	C	151	159	anti-parallel
Strand 3	C	487	495	anti-parallel
Strand 4	D	451	454	parallel
Strand 5	D	430	433	parallel
Strand 6	D	274	278	parallel
Strand 7	D	306	312	parallel
Strand 8	D	405	411	parallel
Strand 9	D	385	390	parallel
Strand 10	D	367	370	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	221	first strand
Strand 2	C	189	193	parallel
Strand 3	C	162	166	parallel
Strand 4	C	241	245	parallel
Strand 5	C	265	269	parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	367	368	first strand
Strand 2	C	385	390	anti-parallel
Strand 3	C	405	411	parallel
Strand 4	C	306	312	parallel
Strand 5	C	274	278	parallel
Strand 6	C	430	433	parallel
Strand 7	C	451	454	parallel
Strand 8	D	487	495	parallel
Strand 9	D	151	159	anti-parallel
Strand 10	D	144	145	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	25	first strand
Strand 2	D	28	30	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	41	first strand
Strand 2	D	48	53	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	221	first strand
Strand 2	D	189	193	parallel
Strand 3	D	162	166	parallel
Strand 4	D	241	245	parallel
Strand 5	D	265	269	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	374	375	first strand
Strand 2	D	381	382	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	25	first strand
Strand 2	B	28	30	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	41	first strand
Strand 2	B	48	53	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	221	first strand
Strand 2	B	189	194	parallel
Strand 3	B	162	167	parallel
Strand 4	B	241	245	parallel
Strand 5	B	265	269	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	386	first strand
Strand 2	B	405	406	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D46

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D46