Analysis of interatomic Contacts of Structural Units in PDB entry:
8D49


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D49 entry

There are 2 chains in PDB entry 8D49 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 5LYS 1232
B
 A 4 U 39
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 8D49. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 49Right-handed alpha
Helix 2
AA2
A
56 79Right-handed alpha
Helix 3
AA3
A
92 102Right-handed alpha
Helix 4
AA4
A
117 119Right-handed 310
Helix 5
AA5
A
128 163Right-handed alpha
Helix 6
AA6
A
172 197Right-handed alpha
Helix 7
AA7
A
201 205Right-handed 310
Helix 8
AA8
A
212 220Right-handed alpha
Helix 9
AA9
A
223 239Right-handed alpha
Helix 10
AB1
A
263 274Right-handed alpha
Helix 11
AB2
A
275 284Right-handed alpha
Helix 12
AB3
A
287 297Right-handed alpha
Helix 13
AB4
A
299 305Right-handed alpha
Helix 14
AB5
A
310 319Right-handed alpha
Helix 15
AB6
A
324 340Right-handed alpha
Helix 16
AB7
A
342 352Right-handed alpha
Helix 17
AB8
A
358 366Right-handed alpha
Helix 18
AB9
A
376 392Right-handed alpha
Helix 19
AC1
A
399 412Right-handed alpha
Helix 20
AC2
A
414 417Right-handed 310
Helix 21
AC3
A
418 438Right-handed alpha
Helix 22
AC4
A
439 443Right-handed 310
Helix 23
AC5
A
446 461Right-handed alpha
Helix 24
AC6
A
469 481Right-handed alpha
Helix 25
AC7
A
488 503Right-handed alpha
Helix 26
AC8
A
504 506Right-handed 310
Helix 27
AC9
A
531 559Right-handed alpha
Helix 28
AD1
A
592 597Right-handed alpha
Helix 29
AD2
A
716 727Right-handed alpha
Helix 30
AD3
A
747 757Right-handed alpha
Helix 31
AD4
A
808 818Right-handed alpha
Helix 32
AD5
A
818 839Right-handed alpha
Helix 33
AD6
A
882 886Right-handed 310
Helix 34
AD7
A
920 922Right-handed 310
Helix 35
AD8
A
939 961Right-handed alpha
Helix 36
AD9
A
961 967Right-handed alpha
Helix 37
AE1
A
968 970Right-handed 310
Helix 38
AE2
A
974 986Right-handed alpha
Helix 39
AE3
A
999 1016Right-handed alpha
Helix 40
AE4
A
1019 1028Right-handed alpha
Helix 41
AE5
A
1030 1034Right-handed 310
Helix 42
AE6
A
1035 1054Right-handed alpha
Helix 43
AE7
A
1065 1070Right-handed 310
Helix 44
AE8
A
1090 1096Right-handed alpha
Helix 45
AE9
A
1102 1119Right-handed alpha
Helix 46
AF1
A
1139 1144Right-handed alpha
Helix 47
AF2
A
1213 1232Right-handed alpha
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There are 10 sheets in PDB entry 8D49. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 14first strand
Strand 2
A
796 799anti-parallel
Strand 3
A
763 765anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
790 793anti-parallel
Strand 3
A
768 774anti-parallel
Strand 4
A
247 250anti-parallel
Strand 5
A
566 572parallel
Strand 6
A
606 613anti-parallel
Strand 7
A
708 715anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
790 793anti-parallel
Strand 3
A
768 774anti-parallel
Strand 4
A
247 250anti-parallel
Strand 5
A
566 572parallel
Strand 6
A
578 584anti-parallel
Strand 7
A
729 732anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 115first strand
Strand 2
A
89 91anti-parallel
Strand 3
A
199 200anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
126 127anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
866 867first strand
Strand 2
A
856 861anti-parallel
Strand 3
A
899 900anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
866 867first strand
Strand 2
A
856 861anti-parallel
Strand 3
A
843 848anti-parallel
Strand 4
A
1058 1063parallel
Strand 5
A
1158 1161parallel
Strand 6
A
1152 1155anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
891 896first strand
Strand 2
A
870 874anti-parallel
Strand 3
A
914 918parallel
Strand 4
A
904 908anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
877 878first strand
Strand 2
A
887 888anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1120 1121first strand
Strand 2
A
1126 1127anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il