Analysis of interatomic Contacts of Structural Units in PDB entry:
8D4B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D4B entry

There are 3 chains in PDB entry 8D4B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 5LYS 1232
B
 A 4 U 44
C
 A -2 G 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 8D4B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 48Right-handed alpha
Helix 2
AA2
A
58 79Right-handed alpha
Helix 3
AA3
A
92 102Right-handed alpha
Helix 4
AA4
A
127 162Right-handed alpha
Helix 5
AA5
A
163 170Right-handed 310
Helix 6
AA6
A
172 196Right-handed alpha
Helix 7
AA7
A
201 206Right-handed 310
Helix 8
AA8
A
212 220Right-handed alpha
Helix 9
AA9
A
222 239Right-handed alpha
Helix 10
AB1
A
263 275Right-handed alpha
Helix 11
AB2
A
275 282Right-handed alpha
Helix 12
AB3
A
287 298Right-handed alpha
Helix 13
AB4
A
299 305Right-handed alpha
Helix 14
AB5
A
310 317Right-handed alpha
Helix 15
AB6
A
324 337Right-handed alpha
Helix 16
AB7
A
342 353Right-handed alpha
Helix 17
AB8
A
358 366Right-handed alpha
Helix 18
AB9
A
371 375Right-handed 310
Helix 19
AC1
A
376 390Right-handed alpha
Helix 20
AC2
A
391 393Right-handed 310
Helix 21
AC3
A
399 412Right-handed alpha
Helix 22
AC4
A
418 438Right-handed alpha
Helix 23
AC5
A
439 443Right-handed 310
Helix 24
AC6
A
447 460Right-handed alpha
Helix 25
AC7
A
469 483Right-handed alpha
Helix 26
AC8
A
487 504Right-handed alpha
Helix 27
AC9
A
529 557Right-handed alpha
Helix 28
AD1
A
558 560Right-handed 310
Helix 29
AD2
A
593 598Right-handed alpha
Helix 30
AD3
A
615 625Right-handed alpha
Helix 31
AD4
A
647 654Right-handed alpha
Helix 32
AD5
A
654 659Right-handed alpha
Helix 33
AD6
A
661 674Right-handed alpha
Helix 34
AD7
A
675 681Right-handed alpha
Helix 35
AD8
A
682 687Right-handed 310
Helix 36
AD9
A
695 707Right-handed alpha
Helix 37
AE1
A
716 726Right-handed alpha
Helix 38
AE2
A
747 757Right-handed alpha
Helix 39
AE3
A
808 818Right-handed alpha
Helix 40
AE4
A
818 837Right-handed alpha
Helix 41
AE5
A
882 886Right-handed 310
Helix 42
AE6
A
920 922Right-handed 310
Helix 43
AE7
A
940 961Right-handed alpha
Helix 44
AE8
A
961 967Right-handed alpha
Helix 45
AE9
A
968 970Right-handed 310
Helix 46
AF1
A
974 983Right-handed alpha
Helix 47
AF2
A
999 1015Right-handed alpha
Helix 48
AF3
A
1016 1018Right-handed 310
Helix 49
AF4
A
1019 1028Right-handed alpha
Helix 50
AF5
A
1032 1054Right-handed alpha
Helix 51
AF6
A
1091 1100Right-handed alpha
Helix 52
AF7
A
1105 1118Right-handed alpha
Helix 53
AF8
A
1205 1209Right-handed 310
Helix 54
AF9
A
1213 1232Right-handed alpha
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There are 7 sheets in PDB entry 8D4B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 18first strand
Strand 2
A
790 799anti-parallel
Strand 3
A
766 774anti-parallel
Strand 4
A
243 250anti-parallel
Strand 5
A
566 567parallel
Strand 6
A
578 584anti-parallel
Strand 7
A
570 572anti-parallel
Strand 8
A
606 613anti-parallel
Strand 9
A
708 715anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 18first strand
Strand 2
A
790 799anti-parallel
Strand 3
A
766 774anti-parallel
Strand 4
A
243 250anti-parallel
Strand 5
A
566 567parallel
Strand 6
A
578 584anti-parallel
Strand 7
A
729 732anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 115first strand
Strand 2
A
89 91anti-parallel
Strand 3
A
199 200anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
899 900first strand
Strand 2
A
856 861anti-parallel
Strand 3
A
843 848anti-parallel
Strand 4
A
1058 1063parallel
Strand 5
A
1158 1161parallel
Strand 6
A
1152 1155anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
887 896first strand
Strand 2
A
870 878anti-parallel
Strand 3
A
914 918parallel
Strand 4
A
904 908anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1072 1073first strand
Strand 2
A
1080 1081anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1120 1121first strand
Strand 2
A
1126 1127anti-parallel
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