Analysis of interatomic Contacts of Structural Units in PDB entry:
8D4X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D4X entry

There are 2 chains in PDB entry 8D4X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 2794
B	MET 1	LYS 2794

There are146 helices in PDB entry 8D4X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	31	Right-handed alpha
Helix 2	AA2	A	37	39	Right-handed 310
Helix 3	AA3	A	40	46	Right-handed alpha
Helix 4	AA4	A	411	418	Right-handed alpha
Helix 5	AA5	A	419	422	Right-handed 310
Helix 6	AA6	A	448	452	Right-handed 310
Helix 7	AA7	A	498	514	Right-handed alpha
Helix 8	AA8	A	551	555	Right-handed 310
Helix 9	AA9	A	578	583	Right-handed alpha
Helix 10	AB1	A	652	656	Right-handed 310
Helix 11	AB2	A	787	793	Right-handed alpha
Helix 12	AB3	A	795	799	Right-handed 310
Helix 13	AB4	A	874	882	Right-handed alpha
Helix 14	AB5	A	884	902	Right-handed alpha
Helix 15	AB6	A	904	913	Right-handed alpha
Helix 16	AB7	A	921	930	Right-handed alpha
Helix 17	AB8	A	1077	1095	Right-handed alpha
Helix 18	AB9	A	1098	1108	Right-handed alpha
Helix 19	AC1	A	1115	1123	Right-handed alpha
Helix 20	AC2	A	1125	1143	Right-handed alpha
Helix 21	AC3	A	1149	1159	Right-handed alpha
Helix 22	AC4	A	1164	1167	Right-handed 310
Helix 23	AC5	A	1168	1175	Right-handed alpha
Helix 24	AC6	A	1180	1185	Right-handed alpha
Helix 25	AC7	A	1208	1214	Right-handed alpha
Helix 26	AC8	A	1247	1262	Right-handed alpha
Helix 27	AC9	A	1263	1267	Right-handed 310
Helix 28	AD1	A	1274	1291	Right-handed alpha
Helix 29	AD2	A	1324	1335	Right-handed alpha
Helix 30	AD3	A	1335	1344	Right-handed alpha
Helix 31	AD4	A	1364	1374	Right-handed alpha
Helix 32	AD5	A	1377	1389	Right-handed alpha
Helix 33	AD6	A	1395	1410	Right-handed alpha
Helix 34	AD7	A	1416	1443	Right-handed alpha
Helix 35	AD8	A	1447	1451	Right-handed 310
Helix 36	AD9	A	1454	1467	Right-handed alpha
Helix 37	AE1	A	1467	1488	Right-handed alpha
Helix 38	AE2	A	1503	1515	Right-handed alpha
Helix 39	AE3	A	1706	1710	Right-handed 310
Helix 40	AE4	A	1714	1718	Right-handed 310
Helix 41	AE5	A	1776	1802	Right-handed alpha
Helix 42	AE6	A	1804	1809	Right-handed alpha
Helix 43	AE7	A	1820	1863	Right-handed alpha
Helix 44	AE8	A	1873	1877	Right-handed 310
Helix 45	AE9	A	1912	1929	Right-handed alpha
Helix 46	AF1	A	1940	1943	Right-handed 310
Helix 47	AF2	A	1944	1966	Right-handed alpha
Helix 48	AF3	A	2043	2048	Right-handed alpha
Helix 49	AF4	A	2048	2053	Right-handed alpha
Helix 50	AF5	A	2054	2057	Right-handed 310
Helix 51	AF6	A	2062	2068	Right-handed alpha
Helix 52	AF7	A	2093	2102	Right-handed alpha
Helix 53	AF8	A	2165	2169	Right-handed 310
Helix 54	AF9	A	2181	2189	Right-handed alpha
Helix 55	AG1	A	2189	2200	Right-handed alpha
Helix 56	AG2	A	2210	2215	Right-handed alpha
Helix 57	AG3	A	2217	2234	Right-handed alpha
Helix 58	AG4	A	2247	2264	Right-handed alpha
Helix 59	AG5	A	2288	2304	Right-handed alpha
Helix 60	AG6	A	2522	2542	Right-handed alpha
Helix 61	AG7	A	2551	2560	Right-handed alpha
Helix 62	AG8	A	2564	2571	Right-handed 310
Helix 63	AG9	A	2572	2587	Right-handed alpha
Helix 64	AH1	A	2590	2599	Right-handed alpha
Helix 65	AH2	A	2627	2629	Right-handed 310
Helix 66	AH3	A	2630	2642	Right-handed alpha
Helix 67	AH4	A	2647	2660	Right-handed alpha
Helix 68	AH5	A	2671	2680	Right-handed alpha
Helix 69	AH6	A	2686	2693	Right-handed alpha
Helix 70	AH7	A	2703	2720	Right-handed alpha
Helix 71	AH8	A	2722	2735	Right-handed alpha
Helix 72	AH9	A	2779	2793	Right-handed alpha
Helix 73	AI1	B	14	31	Right-handed alpha
Helix 74	AI2	B	37	39	Right-handed 310
Helix 75	AI3	B	40	45	Right-handed alpha
Helix 76	AI4	B	412	418	Right-handed alpha
Helix 77	AI5	B	419	422	Right-handed 310
Helix 78	AI6	B	449	455	Right-handed 310
Helix 79	AI7	B	498	513	Right-handed alpha
Helix 80	AI8	B	552	555	Right-handed 310
Helix 81	AI9	B	578	583	Right-handed 310
Helix 82	AJ1	B	787	793	Right-handed alpha
Helix 83	AJ2	B	874	883	Right-handed alpha
Helix 84	AJ3	B	884	901	Right-handed alpha
Helix 85	AJ4	B	906	913	Right-handed alpha
Helix 86	AJ5	B	921	931	Right-handed alpha
Helix 87	AJ6	B	1077	1095	Right-handed alpha
Helix 88	AJ7	B	1101	1106	Right-handed alpha
Helix 89	AJ8	B	1115	1123	Right-handed alpha
Helix 90	AJ9	B	1125	1142	Right-handed alpha
Helix 91	AK1	B	1149	1159	Right-handed alpha
Helix 92	AK2	B	1164	1167	Right-handed 310
Helix 93	AK3	B	1168	1175	Right-handed alpha
Helix 94	AK4	B	1179	1185	Right-handed alpha
Helix 95	AK5	B	1208	1215	Right-handed alpha
Helix 96	AK6	B	1233	1238	Right-handed alpha
Helix 97	AK7	B	1247	1262	Right-handed alpha
Helix 98	AK8	B	1263	1267	Right-handed 310
Helix 99	AK9	B	1274	1290	Right-handed alpha
Helix 100	AL1	B	1291	1293	Right-handed 310
Helix 101	AL2	B	1323	1335	Right-handed alpha
Helix 102	AL3	B	1335	1344	Right-handed alpha
Helix 103	AL4	B	1364	1374	Right-handed alpha
Helix 104	AL5	B	1377	1389	Right-handed alpha
Helix 105	AL6	B	1395	1410	Right-handed alpha
Helix 106	AL7	B	1416	1443	Right-handed alpha
Helix 107	AL8	B	1447	1451	Right-handed 310
Helix 108	AL9	B	1454	1467	Right-handed alpha
Helix 109	AM1	B	1467	1489	Right-handed alpha
Helix 110	AM2	B	1502	1515	Right-handed alpha
Helix 111	AM3	B	1706	1710	Right-handed 310
Helix 112	AM4	B	1711	1718	Right-handed 310
Helix 113	AM5	B	1776	1801	Right-handed alpha
Helix 114	AM6	B	1804	1809	Right-handed alpha
Helix 115	AM7	B	1820	1862	Right-handed alpha
Helix 116	AM8	B	1873	1878	Right-handed 310
Helix 117	AM9	B	1912	1929	Right-handed alpha
Helix 118	AN1	B	1940	1943	Right-handed 310
Helix 119	AN2	B	1944	1966	Right-handed alpha
Helix 120	AN3	B	2043	2048	Right-handed alpha
Helix 121	AN4	B	2048	2053	Right-handed alpha
Helix 122	AN5	B	2054	2057	Right-handed 310
Helix 123	AN6	B	2062	2068	Right-handed alpha
Helix 124	AN7	B	2093	2098	Right-handed alpha
Helix 125	AN8	B	2165	2169	Right-handed 310
Helix 126	AN9	B	2181	2189	Right-handed alpha
Helix 127	AO1	B	2189	2200	Right-handed alpha
Helix 128	AO2	B	2203	2207	Right-handed 310
Helix 129	AO3	B	2210	2215	Right-handed alpha
Helix 130	AO4	B	2217	2235	Right-handed alpha
Helix 131	AO5	B	2247	2264	Right-handed alpha
Helix 132	AO6	B	2288	2305	Right-handed alpha
Helix 133	AO7	B	2522	2542	Right-handed alpha
Helix 134	AO8	B	2551	2560	Right-handed alpha
Helix 135	AO9	B	2566	2572	Right-handed alpha
Helix 136	AP1	B	2572	2587	Right-handed alpha
Helix 137	AP2	B	2590	2599	Right-handed alpha
Helix 138	AP3	B	2627	2629	Right-handed 310
Helix 139	AP4	B	2630	2644	Right-handed alpha
Helix 140	AP5	B	2647	2660	Right-handed alpha
Helix 141	AP6	B	2664	2668	Right-handed 310
Helix 142	AP7	B	2671	2680	Right-handed alpha
Helix 143	AP8	B	2686	2693	Right-handed alpha
Helix 144	AP9	B	2703	2720	Right-handed alpha
Helix 145	AQ1	B	2722	2735	Right-handed alpha
Helix 146	AQ2	B	2780	2793	Right-handed alpha

There are 26 sheets in PDB entry 8D4X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	10	first strand
Strand 2	A	863	872	anti-parallel
Strand 3	A	841	850	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	53	first strand
Strand 2	A	57	62	anti-parallel
Strand 3	A	68	74	anti-parallel
Strand 4	A	354	356	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	53	first strand
Strand 2	A	57	62	anti-parallel
Strand 3	A	68	74	anti-parallel
Strand 4	A	361	362	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	375	first strand
Strand 2	A	382	385	anti-parallel
Strand 3	A	390	392	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	429	first strand
Strand 2	A	434	438	anti-parallel
Strand 3	A	443	446	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	477	first strand
Strand 2	A	482	486	anti-parallel
Strand 3	A	491	495	anti-parallel
Strand 4	A	732	738	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	648	651	first strand
Strand 2	A	572	576	anti-parallel
Strand 3	A	557	561	anti-parallel
Strand 4	A	546	550	anti-parallel
Strand 5	A	657	658	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	745	752	first strand
Strand 2	A	755	761	anti-parallel
Strand 3	A	766	771	anti-parallel
Strand 4	A	780	783	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	800	802	first strand
Strand 2	A	811	813	anti-parallel
Strand 3	A	819	820	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1194	1196	first strand
Strand 2	A	1221	1223	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2505	2506	first strand
Strand 2	A	2515	2516	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2603	2605	first strand
Strand 2	A	2614	2616	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2695	2696	first strand
Strand 2	A	2751	2755	parallel
Strand 3	A	2771	2775	parallel
Strand 4	A	2764	2766	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	10	first strand
Strand 2	B	863	872	anti-parallel
Strand 3	B	841	850	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	53	first strand
Strand 2	B	57	60	anti-parallel
Strand 3	B	68	74	anti-parallel
Strand 4	B	354	356	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	53	first strand
Strand 2	B	57	60	anti-parallel
Strand 3	B	68	74	anti-parallel
Strand 4	B	361	362	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	375	first strand
Strand 2	B	382	385	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	429	first strand
Strand 2	B	433	438	anti-parallel
Strand 3	B	442	447	anti-parallel
Strand 4	B	460	464	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	478	first strand
Strand 2	B	482	486	anti-parallel
Strand 3	B	491	495	anti-parallel
Strand 4	B	736	737	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	648	652	first strand
Strand 2	B	571	576	anti-parallel
Strand 3	B	557	561	anti-parallel
Strand 4	B	547	550	anti-parallel
Strand 5	B	656	658	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	745	751	first strand
Strand 2	B	756	761	anti-parallel
Strand 3	B	766	771	anti-parallel
Strand 4	B	780	783	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	800	802	first strand
Strand 2	B	811	813	anti-parallel
Strand 3	B	819	820	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1194	1196	first strand
Strand 2	B	1221	1223	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2505	2506	first strand
Strand 2	B	2515	2516	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2603	2606	first strand
Strand 2	B	2613	2616	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2695	2696	first strand
Strand 2	B	2751	2755	parallel
Strand 3	B	2771	2775	parallel
Strand 4	B	2764	2766	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D4X

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D4X