Analysis of interatomic Contacts of Structural Units in PDB entry:
8D4Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D4Y entry

There are 2 chains in PDB entry 8D4Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1400SER 1808
B
 LEU 1400MET 1807
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8D4Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1417 1432Right-handed alpha
Helix 2
AA2
A
1446 1451Right-handed 310
Helix 3
AA3
A
1452 1468Right-handed alpha
Helix 4
AA4
A
1489 1514Right-handed alpha
Helix 5
AA5
A
1707 1722Right-handed alpha
Helix 6
AA6
A
1730 1744Right-handed alpha
Helix 7
AA7
A
1748 1755Right-handed alpha
Helix 8
AA8
A
1756 1766Right-handed 310
Helix 9
AA9
A
1773 1803Right-handed alpha
Helix 10
AB1
B
1417 1432Right-handed alpha
Helix 11
AB2
B
1434 1438Right-handed 310
Helix 12
AB3
B
1452 1468Right-handed alpha
Helix 13
AB4
B
1488 1514Right-handed alpha
Helix 14
AB5
B
1707 1722Right-handed alpha
Helix 15
AB6
B
1730 1745Right-handed alpha
Helix 16
AB7
B
1748 1755Right-handed alpha
Helix 17
AB8
B
1756 1766Right-handed 310
Helix 18
AB9
B
1768 1772Right-handed 310
Helix 19
AC1
B
1773 1804Right-handed alpha
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There are 2 sheets in PDB entry 8D4Y. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1404 1407first strand
Strand 2
A
1410 1413anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1404 1407first strand
Strand 2
B
1410 1413anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il