Analysis of interatomic Contacts of Structural Units in PDB entry:
8D50

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D50 entry

There are 6 chains in PDB entry 8D50 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	GLU 32	GLN 507
B	PHE 519	ASP 664
D	GLN 3	SER 186
E	VAL 3	VAL 109
L	TYR 5	THR 216
H	VAL 2	PRO 232

There are 19 helices in PDB entry 8D50. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	98	115	Right-handed alpha
Helix 2	AA2	G	122	126	Right-handed 310
Helix 3	AA3	G	334	353	Right-handed alpha
Helix 4	AA4	G	369	373	Right-handed alpha
Helix 5	AA5	G	475	481	Right-handed alpha
Helix 6	AA6	B	529	534	Right-handed alpha
Helix 7	AA7	B	536	545	Right-handed alpha
Helix 8	AA8	B	568	596	Right-handed alpha
Helix 9	AA9	B	619	624	Right-handed alpha
Helix 10	AB1	B	627	649	Right-handed alpha
Helix 11	AB2	B	650	662	Right-handed alpha
Helix 12	AB3	D	62	65	Right-handed 310
Helix 13	AB4	E	81	85	Right-handed 310
Helix 14	AB5	L	82	86	Right-handed 310
Helix 15	AB6	L	128	134	Right-handed alpha
Helix 16	AB7	L	188	193	Right-handed alpha
Helix 17	AB8	H	28	32	Right-handed 310
Helix 18	AB9	H	61	64	Right-handed 310
Helix 19	AC1	H	86	90	Right-handed 310

There are 26 sheets in PDB entry 8D50. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	494	499	first strand
Strand 2	G	35	40	anti-parallel
Strand 3	B	604	609	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	488	491	anti-parallel
Strand 3	G	223	225	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	54	first strand
Strand 2	G	217	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	92	first strand
Strand 2	G	238	239	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	175	first strand
Strand 2	G	155	162	anti-parallel
Strand 3	G	129	133	anti-parallel
Strand 4	G	190	193	anti-parallel
Strand 5	G	181	183	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	200	203	first strand
Strand 2	G	432	435	parallel
Strand 3	G	423	424	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	261	first strand
Strand 2	G	443	455	anti-parallel
Strand 3	G	293	298	anti-parallel
Strand 4	G	329	333	anti-parallel
Strand 5	G	414	420	anti-parallel
Strand 6	G	381	385	anti-parallel
Strand 7	G	374	378	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	274	first strand
Strand 2	G	284	287	anti-parallel
Strand 3	G	443	455	anti-parallel
Strand 4	G	469	470	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	301	312	first strand
Strand 2	G	315	323	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	74	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	51	first strand
Strand 2	D	34	36	anti-parallel
Strand 3	D	92	94	anti-parallel
Strand 4	D	102	103	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	142	first strand
Strand 2	D	178	179	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	6	first strand
Strand 2	E	18	23	anti-parallel
Strand 3	E	72	77	anti-parallel
Strand 4	E	64	68	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	11	first strand
Strand 2	E	105	108	parallel
Strand 3	E	87	93	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	47	50	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	11	first strand
Strand 2	E	105	108	parallel
Strand 3	E	87	93	anti-parallel
Strand 4	E	100	101	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	7	14	first strand
Strand 2	L	107	113	parallel
Strand 3	L	87	95	anti-parallel
Strand 4	L	31	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	22	first strand
Strand 2	L	75	78	anti-parallel
Strand 3	L	62	63	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	121	125	first strand
Strand 2	L	137	146	anti-parallel
Strand 3	L	178	187	anti-parallel
Strand 4	L	166	168	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	121	125	first strand
Strand 2	L	137	146	anti-parallel
Strand 3	L	178	187	anti-parallel
Strand 4	L	172	174	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	160	162	first strand
Strand 2	L	151	157	anti-parallel
Strand 3	L	198	204	anti-parallel
Strand 4	L	207	213	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	17	24	anti-parallel
Strand 3	H	77	83	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	127	130	parallel
Strand 3	H	91	92	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	47	51	anti-parallel
Strand 3	H	33	37	anti-parallel
Strand 4	H	94	104	anti-parallel
Strand 5	H	113	118	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	139	143	first strand
Strand 2	H	154	164	anti-parallel
Strand 3	H	195	204	anti-parallel
Strand 4	H	182	184	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	139	143	first strand
Strand 2	H	154	164	anti-parallel
Strand 3	H	195	204	anti-parallel
Strand 4	H	188	189	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	215	216	first strand
Strand 2	H	227	228	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D50

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D50