Analysis of interatomic Contacts of Structural Units in PDB entry:
8D55

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D55 entry

There are 3 chains in PDB entry 8D55 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 14	PRO 1162
B	GLN 14	PRO 1162
C	GLN 14	PRO 1162

There are 88 helices in PDB entry 8D55. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	294	304	Right-handed alpha
Helix 2	AA2	A	338	343	Right-handed alpha
Helix 3	AA3	A	349	353	Right-handed 310
Helix 4	AA4	A	364	372	Right-handed alpha
Helix 5	AA5	A	385	389	Right-handed 310
Helix 6	AA6	A	405	410	Right-handed 310
Helix 7	AA7	A	416	422	Right-handed alpha
Helix 8	AA8	A	438	443	Right-handed alpha
Helix 9	AA9	A	498	502	Right-handed 310
Helix 10	AB1	A	616	620	Right-handed 310
Helix 11	AB2	A	633	639	Right-handed 310
Helix 12	AB3	A	737	743	Right-handed alpha
Helix 13	AB4	A	746	754	Right-handed alpha
Helix 14	AB5	A	755	757	Right-handed 310
Helix 15	AB6	A	758	783	Right-handed alpha
Helix 16	AB7	A	801	805	Right-handed 310
Helix 17	AB8	A	816	826	Right-handed alpha
Helix 18	AB9	A	841	847	Right-handed 310
Helix 19	AC1	A	848	856	Right-handed alpha
Helix 20	AC2	A	866	885	Right-handed alpha
Helix 21	AC3	A	886	891	Right-handed alpha
Helix 22	AC4	A	897	909	Right-handed alpha
Helix 23	AC5	A	913	918	Right-handed alpha
Helix 24	AC6	A	919	941	Right-handed alpha
Helix 25	AC7	A	945	965	Right-handed alpha
Helix 26	AC8	A	976	984	Right-handed alpha
Helix 27	AC9	A	987	1033	Right-handed alpha
Helix 28	AD1	A	1140	1160	Right-handed alpha
Helix 29	AD2	B	96	99	Right-handed 310
Helix 30	AD3	B	294	304	Right-handed alpha
Helix 31	AD4	B	338	343	Right-handed alpha
Helix 32	AD5	B	349	353	Right-handed 310
Helix 33	AD6	B	364	370	Right-handed alpha
Helix 34	AD7	B	383	389	Right-handed 310
Helix 35	AD8	B	405	410	Right-handed 310
Helix 36	AD9	B	416	422	Right-handed alpha
Helix 37	AE1	B	438	443	Right-handed alpha
Helix 38	AE2	B	498	502	Right-handed 310
Helix 39	AE3	B	616	618	Right-handed 310
Helix 40	AE4	B	619	624	Right-handed alpha
Helix 41	AE5	B	633	639	Right-handed 310
Helix 42	AE6	B	737	743	Right-handed alpha
Helix 43	AE7	B	746	754	Right-handed alpha
Helix 44	AE8	B	755	757	Right-handed 310
Helix 45	AE9	B	758	783	Right-handed alpha
Helix 46	AF1	B	801	805	Right-handed 310
Helix 47	AF2	B	816	826	Right-handed alpha
Helix 48	AF3	B	843	848	Right-handed alpha
Helix 49	AF4	B	848	856	Right-handed alpha
Helix 50	AF5	B	866	885	Right-handed alpha
Helix 51	AF6	B	886	891	Right-handed alpha
Helix 52	AF7	B	897	909	Right-handed alpha
Helix 53	AF8	B	913	918	Right-handed alpha
Helix 54	AF9	B	919	941	Right-handed alpha
Helix 55	AG1	B	945	965	Right-handed alpha
Helix 56	AG2	B	976	984	Right-handed alpha
Helix 57	AG3	B	989	1033	Right-handed alpha
Helix 58	AG4	B	1140	1159	Right-handed alpha
Helix 59	AG5	C	96	99	Right-handed 310
Helix 60	AG6	C	147	150	Right-handed 310
Helix 61	AG7	C	294	304	Right-handed alpha
Helix 62	AG8	C	338	343	Right-handed alpha
Helix 63	AG9	C	349	353	Right-handed 310
Helix 64	AH1	C	365	370	Right-handed alpha
Helix 65	AH2	C	383	389	Right-handed 310
Helix 66	AH3	C	405	411	Right-handed 310
Helix 67	AH4	C	416	422	Right-handed alpha
Helix 68	AH5	C	438	443	Right-handed alpha
Helix 69	AH6	C	498	502	Right-handed 310
Helix 70	AH7	C	616	618	Right-handed 310
Helix 71	AH8	C	619	624	Right-handed alpha
Helix 72	AH9	C	633	639	Right-handed 310
Helix 73	AI1	C	737	743	Right-handed alpha
Helix 74	AI2	C	746	754	Right-handed alpha
Helix 75	AI3	C	755	757	Right-handed 310
Helix 76	AI4	C	758	783	Right-handed alpha
Helix 77	AI5	C	816	826	Right-handed alpha
Helix 78	AI6	C	843	848	Right-handed alpha
Helix 79	AI7	C	848	855	Right-handed alpha
Helix 80	AI8	C	866	885	Right-handed alpha
Helix 81	AI9	C	886	891	Right-handed alpha
Helix 82	AJ1	C	897	909	Right-handed alpha
Helix 83	AJ2	C	913	918	Right-handed alpha
Helix 84	AJ3	C	919	941	Right-handed alpha
Helix 85	AJ4	C	945	965	Right-handed alpha
Helix 86	AJ5	C	976	984	Right-handed alpha
Helix 87	AJ6	C	989	1033	Right-handed alpha
Helix 88	AJ7	C	1140	1159	Right-handed alpha

There are 46 sheets in PDB entry 8D55. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	31	first strand
Strand 2	A	60	68	anti-parallel
Strand 3	A	262	269	anti-parallel
Strand 4	A	89	94	anti-parallel
Strand 5	A	187	197	anti-parallel
Strand 6	A	200	210	anti-parallel
Strand 7	A	224	229	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	B	565	567	parallel
Strand 3	B	573	577	anti-parallel
Strand 4	B	584	588	anti-parallel
Strand 5	B	546	554	anti-parallel
Strand 6	B	538	543	anti-parallel
Strand 7	B	325	328	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	55	first strand
Strand 2	A	271	279	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	237	244	anti-parallel
Strand 3	A	141	142	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	237	244	anti-parallel
Strand 3	A	101	107	anti-parallel
Strand 4	A	116	121	anti-parallel
Strand 5	A	126	131	anti-parallel
Strand 6	A	168	172	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	135	first strand
Strand 2	A	160	163	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	145	first strand
Strand 2	A	152	153	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	319	first strand
Strand 2	A	592	599	anti-parallel
Strand 3	A	609	613	anti-parallel
Strand 4	A	648	651	anti-parallel
Strand 5	A	643	645	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	328	first strand
Strand 2	A	538	543	parallel
Strand 3	A	546	554	anti-parallel
Strand 4	A	584	588	anti-parallel
Strand 5	A	573	577	anti-parallel
Strand 6	A	565	567	anti-parallel
Strand 7	C	42	43	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	395	403	anti-parallel
Strand 3	A	507	515	anti-parallel
Strand 4	A	431	437	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	524	525	parallel
Strand 3	A	391	392	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	655	first strand
Strand 2	A	690	696	parallel
Strand 3	A	670	676	anti-parallel
Strand 4	A	664	667	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	704	first strand
Strand 2	C	787	790	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	728	first strand
Strand 2	A	1059	1078	anti-parallel
Strand 3	A	1047	1056	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	728	first strand
Strand 2	A	1059	1078	anti-parallel
Strand 3	A	1094	1097	anti-parallel
Strand 4	A	1102	1105	anti-parallel
Strand 5	A	1113	1114	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	733	736	first strand
Strand 2	A	858	861	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	787	790	first strand
Strand 2	B	701	704	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1125	first strand
Strand 2	A	1086	1090	anti-parallel
Strand 3	A	1081	1082	anti-parallel
Strand 4	A	1133	1134	parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	31	first strand
Strand 2	B	60	68	anti-parallel
Strand 3	B	262	269	anti-parallel
Strand 4	B	89	94	anti-parallel
Strand 5	B	187	197	anti-parallel
Strand 6	B	200	210	anti-parallel
Strand 7	B	224	227	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	43	first strand
Strand 2	C	565	567	parallel
Strand 3	C	573	577	anti-parallel
Strand 4	C	584	588	anti-parallel
Strand 5	C	546	554	anti-parallel
Strand 6	C	538	543	anti-parallel
Strand 7	C	325	328	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	55	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	244	anti-parallel
Strand 3	B	140	142	parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	244	anti-parallel
Strand 3	B	101	107	anti-parallel
Strand 4	B	116	121	anti-parallel
Strand 5	B	126	135	anti-parallel
Strand 6	B	160	172	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	145	first strand
Strand 2	B	152	153	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	319	first strand
Strand 2	B	592	599	anti-parallel
Strand 3	B	609	613	anti-parallel
Strand 4	B	648	651	anti-parallel
Strand 5	B	643	645	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	394	403	anti-parallel
Strand 3	B	507	516	anti-parallel
Strand 4	B	431	437	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	362	first strand
Strand 2	B	524	525	parallel
Strand 3	B	391	392	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	690	696	parallel
Strand 3	B	670	676	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	728	first strand
Strand 2	B	1059	1078	anti-parallel
Strand 3	B	1047	1056	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	728	first strand
Strand 2	B	1059	1078	anti-parallel
Strand 3	B	1094	1097	anti-parallel
Strand 4	B	1102	1105	anti-parallel
Strand 5	B	1113	1114	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	733	736	first strand
Strand 2	B	858	861	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	787	790	first strand
Strand 2	C	701	704	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1125	first strand
Strand 2	B	1086	1090	anti-parallel
Strand 3	B	1081	1082	anti-parallel
Strand 4	B	1133	1134	parallel

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There are 7 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	31	first strand
Strand 2	C	60	68	anti-parallel
Strand 3	C	262	269	anti-parallel
Strand 4	C	89	94	anti-parallel
Strand 5	C	187	197	anti-parallel
Strand 6	C	200	210	anti-parallel
Strand 7	C	224	230	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	55	first strand
Strand 2	C	271	279	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	244	anti-parallel
Strand 3	C	141	142	parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	244	anti-parallel
Strand 3	C	101	107	anti-parallel
Strand 4	C	116	121	anti-parallel
Strand 5	C	126	135	anti-parallel
Strand 6	C	160	172	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	145	first strand
Strand 2	C	152	153	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	319	first strand
Strand 2	C	592	599	anti-parallel
Strand 3	C	609	613	anti-parallel
Strand 4	C	648	651	anti-parallel
Strand 5	C	643	645	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	395	403	anti-parallel
Strand 3	C	507	515	anti-parallel
Strand 4	C	431	437	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	362	first strand
Strand 2	C	524	525	parallel
Strand 3	C	391	392	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	654	655	first strand
Strand 2	C	690	696	parallel
Strand 3	C	670	676	anti-parallel
Strand 4	C	664	667	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	728	first strand
Strand 2	C	1059	1076	anti-parallel
Strand 3	C	1047	1056	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	733	736	first strand
Strand 2	C	858	861	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1120	1125	first strand
Strand 2	C	1086	1090	anti-parallel
Strand 3	C	1081	1082	anti-parallel
Strand 4	C	1133	1134	parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1094	1097	first strand
Strand 2	C	1102	1105	anti-parallel
Strand 3	C	1113	1114	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D55

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D55