Analysis of interatomic Contacts of Structural Units in PDB entry:
8D57

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D57 entry

There are 6 chains in PDB entry 8D57 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 4	ASP 270
B	PRO 5	GLN 272
C	ALA 4	ASP 270
D	ALA 4	ASN 269
E	ALA 4	ASP 270
F	ALA 4	HIS 118

There are 67 helices in PDB entry 8D57. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	27	Right-handed alpha
Helix 2	AA2	A	46	51	Right-handed alpha
Helix 3	AA3	A	67	71	Right-handed 310
Helix 4	AA4	A	79	94	Right-handed alpha
Helix 5	AA5	A	105	116	Right-handed alpha
Helix 6	AA6	A	128	146	Right-handed alpha
Helix 7	AA7	A	147	149	Right-handed 310
Helix 8	AA8	A	166	181	Right-handed alpha
Helix 9	AA9	A	183	187	Right-handed alpha
Helix 10	AB1	A	240	253	Right-handed alpha
Helix 11	AB2	A	261	266	Right-handed alpha
Helix 12	AB3	B	14	27	Right-handed alpha
Helix 13	AB4	B	46	51	Right-handed alpha
Helix 14	AB5	B	64	71	Right-handed 310
Helix 15	AB6	B	79	94	Right-handed alpha
Helix 16	AB7	B	105	116	Right-handed alpha
Helix 17	AB8	B	128	146	Right-handed alpha
Helix 18	AB9	B	147	149	Right-handed 310
Helix 19	AC1	B	166	181	Right-handed alpha
Helix 20	AC2	B	183	187	Right-handed alpha
Helix 21	AC3	B	240	253	Right-handed alpha
Helix 22	AC4	B	261	266	Right-handed alpha
Helix 23	AC5	B	267	271	Right-handed 310
Helix 24	AC6	C	14	27	Right-handed alpha
Helix 25	AC7	C	46	51	Right-handed alpha
Helix 26	AC8	C	64	71	Right-handed 310
Helix 27	AC9	C	79	94	Right-handed alpha
Helix 28	AD1	C	105	116	Right-handed alpha
Helix 29	AD2	C	128	146	Right-handed alpha
Helix 30	AD3	C	147	149	Right-handed 310
Helix 31	AD4	C	166	181	Right-handed alpha
Helix 32	AD5	C	183	187	Right-handed alpha
Helix 33	AD6	C	239	253	Right-handed alpha
Helix 34	AD7	C	261	266	Right-handed alpha
Helix 35	AD8	D	14	27	Right-handed alpha
Helix 36	AD9	D	46	51	Right-handed alpha
Helix 37	AE1	D	67	71	Right-handed 310
Helix 38	AE2	D	79	94	Right-handed alpha
Helix 39	AE3	D	105	116	Right-handed alpha
Helix 40	AE4	D	128	146	Right-handed alpha
Helix 41	AE5	D	147	149	Right-handed 310
Helix 42	AE6	D	166	181	Right-handed alpha
Helix 43	AE7	D	183	187	Right-handed alpha
Helix 44	AE8	D	239	253	Right-handed alpha
Helix 45	AE9	D	261	266	Right-handed alpha
Helix 46	AF1	E	14	27	Right-handed alpha
Helix 47	AF2	E	46	51	Right-handed alpha
Helix 48	AF3	E	67	71	Right-handed 310
Helix 49	AF4	E	79	94	Right-handed alpha
Helix 50	AF5	E	105	116	Right-handed alpha
Helix 51	AF6	E	128	146	Right-handed alpha
Helix 52	AF7	E	147	149	Right-handed 310
Helix 53	AF8	E	166	181	Right-handed alpha
Helix 54	AF9	E	183	187	Right-handed alpha
Helix 55	AG1	E	239	253	Right-handed alpha
Helix 56	AG2	E	261	266	Right-handed alpha
Helix 57	AG3	F	14	27	Right-handed alpha
Helix 58	AG4	F	46	51	Right-handed alpha
Helix 59	AG5	F	67	71	Right-handed 310
Helix 60	AG6	F	79	94	Right-handed alpha
Helix 61	AG7	F	105	116	Right-handed alpha
Helix 62	AG8	F	128	146	Right-handed alpha
Helix 63	AG9	F	147	149	Right-handed 310
Helix 64	AH1	F	166	181	Right-handed alpha
Helix 65	AH2	F	183	187	Right-handed alpha
Helix 66	AH3	F	240	253	Right-handed alpha
Helix 67	AH4	F	261	266	Right-handed alpha

There are 14 sheets in PDB entry 8D57. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	35	first strand
Strand 2	A	6	10	parallel
Strand 3	A	73	76	parallel
Strand 4	A	96	99	parallel
Strand 5	A	121	123	parallel
Strand 6	A	259	260	parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	A	204	210	parallel
Strand 3	A	150	157	parallel
Strand 4	A	217	223	anti-parallel
Strand 5	A	227	235	anti-parallel
Strand 6	C	227	235	anti-parallel
Strand 7	C	217	223	anti-parallel
Strand 8	C	150	157	anti-parallel
Strand 9	C	204	210	parallel
Strand 10	C	188	189	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	164	first strand
Strand 2	D	194	195	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	195	first strand
Strand 2	D	163	164	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	30	35	parallel
Strand 3	B	6	10	parallel
Strand 4	B	73	76	parallel
Strand 5	B	96	99	parallel
Strand 6	B	121	123	parallel
Strand 7	B	259	260	parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	189	first strand
Strand 2	B	204	210	parallel
Strand 3	B	150	157	parallel
Strand 4	B	217	223	anti-parallel
Strand 5	B	227	235	anti-parallel
Strand 6	D	227	235	anti-parallel
Strand 7	D	217	223	anti-parallel
Strand 8	D	150	157	anti-parallel
Strand 9	D	204	210	parallel
Strand 10	D	188	189	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	164	first strand
Strand 2	C	194	195	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	195	first strand
Strand 2	C	163	164	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	61	first strand
Strand 2	C	30	35	parallel
Strand 3	C	6	10	parallel
Strand 4	C	73	76	parallel
Strand 5	C	96	99	parallel
Strand 6	C	121	123	parallel
Strand 7	C	259	260	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	61	first strand
Strand 2	D	30	35	parallel
Strand 3	D	6	10	parallel
Strand 4	D	73	76	parallel
Strand 5	D	96	99	parallel
Strand 6	D	121	123	parallel
Strand 7	D	259	260	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	61	first strand
Strand 2	E	30	35	parallel
Strand 3	E	6	10	parallel
Strand 4	E	73	76	parallel
Strand 5	E	96	99	parallel
Strand 6	E	121	123	parallel
Strand 7	E	259	260	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	188	189	first strand
Strand 2	E	204	210	parallel
Strand 3	E	150	157	parallel
Strand 4	E	217	223	anti-parallel
Strand 5	E	228	234	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	61	first strand
Strand 2	F	30	35	parallel
Strand 3	F	6	10	parallel
Strand 4	F	73	76	parallel
Strand 5	F	96	99	parallel
Strand 6	F	121	123	parallel
Strand 7	F	259	260	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	188	189	first strand
Strand 2	F	204	210	parallel
Strand 3	F	150	157	parallel
Strand 4	F	217	223	anti-parallel
Strand 5	F	228	234	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D57

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D57