Analysis of interatomic Contacts of Structural Units in PDB entry:
8D59


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D59 entry

There is 1 chain in PDB entry 8D59 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 37GLN 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8D59. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 44Right-handed 310
Helix 2
AA2
A
45 49Right-handed 310
Helix 3
AA3
A
88 95Right-handed alpha
Helix 4
AA4
A
109 126Right-handed alpha
Helix 5
AA5
A
144 149Right-handed alpha
Helix 6
AA6
A
177 187Right-handed alpha
Helix 7
AA7
A
200 214Right-handed alpha
Helix 8
AA8
A
221 226Right-handed 310
Helix 9
AA9
A
230 234Right-handed 310
Helix 10
AB1
A
238 247Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8D59.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 138first strand
Strand 2
A
102 107parallel
Strand 3
A
78 83parallel
Strand 4
A
154 160parallel
Strand 5
A
188 198parallel
Strand 6
A
252 258anti-parallel
Strand 7
A
217 220anti-parallel
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