Analysis of interatomic Contacts of Structural Units in PDB entry:
8D5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D5C entry

There are 15 chains in PDB entry 8D5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
PHE 522ASP 664
Y
PHE 522ASP 664
Z
PHE 522ASP 664
A
ALA 32VAL 505
D
LYS 1VAL 176
B
ALA 32VAL 505
E
LYS 1VAL 176
C
ALA 32VAL 505
F
LYS 1VAL 176
H
GLN 1ALA 114
L
ASP 1THR 109
I
GLN 1ALA 114
J
ASP 1THR 109
P
GLN 1ALA 114
Q
ASP 1THR 109
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 8D5C. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
X
529 547Right-handed alpha
Helix 2
AA2
X
568 593Right-handed alpha
Helix 3
AA3
X
618 625Right-handed alpha
Helix 4
AA4
X
627 635Right-handed alpha
Helix 5
AA5
X
640 664Right-handed alpha
Helix 6
AA6
Y
529 546Right-handed alpha
Helix 7
AA7
Y
565 567Right-handed 310
Helix 8
AA8
Y
568 593Right-handed alpha
Helix 9
AA9
Y
618 625Right-handed alpha
Helix 10
AB1
Y
627 635Right-handed alpha
Helix 11
AB2
Y
638 664Right-handed alpha
Helix 12
AB3
Z
529 546Right-handed alpha
Helix 13
AB4
Z
567 593Right-handed alpha
Helix 14
AB5
Z
618 625Right-handed alpha
Helix 15
AB6
Z
627 635Right-handed alpha
Helix 16
AB7
Z
638 664Right-handed alpha
Helix 17
AB8
A
64 73Right-handed alpha
Helix 18
AB9
A
100 113Right-handed alpha
Helix 19
AC1
A
334 350Right-handed alpha
Helix 20
AC2
A
368 373Right-handed alpha
Helix 21
AC3
A
474 481Right-handed alpha
Helix 22
AC4
D
60 65Right-handed 310
Helix 23
AC5
D
75 79Right-handed 310
Helix 24
AC6
D
150 154Right-handed 310
Helix 25
AC7
B
64 73Right-handed alpha
Helix 26
AC8
B
99 116Right-handed alpha
Helix 27
AC9
B
334 351Right-handed alpha
Helix 28
AD1
B
474 480Right-handed alpha
Helix 29
AD2
E
75 79Right-handed 310
Helix 30
AD3
E
150 154Right-handed 310
Helix 31
AD4
C
64 73Right-handed alpha
Helix 32
AD5
C
100 116Right-handed alpha
Helix 33
AD6
C
335 353Right-handed alpha
Helix 34
AD7
C
368 373Right-handed alpha
Helix 35
AD8
C
387 391Right-handed 310
Helix 36
AD9
C
474 480Right-handed alpha
Helix 37
AE1
F
59 65Right-handed 310
Helix 38
AE2
F
75 79Right-handed 310
Helix 39
AE3
F
150 154Right-handed 310
Helix 40
AE4
H
61 64Right-handed 310
Helix 41
AE5
H
83 87Right-handed 310
Helix 42
AE6
L
79 83Right-handed 310
Helix 43
AE7
I
83 87Right-handed 310
Helix 44
AE8
J
79 83Right-handed 310
Helix 45
AE9
P
61 64Right-handed 310
Helix 46
AF1
P
83 87Right-handed 310
Helix 47
AF2
Q
79 83Right-handed 310
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There are 44 sheets in PDB entry 8D5C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Z
604 609first strand
Strand 2
C
35 40anti-parallel
Strand 3
C
494 499anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
35 39first strand
Strand 2
A
495 499anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
45 47first strand
Strand 2
A
487 491anti-parallel
Strand 3
A
224 228anti-parallel
Strand 4
A
242 245anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
53 55first strand
Strand 2
A
216 218anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
120 121first strand
Strand 2
A
432 434anti-parallel
Strand 3
A
423 425anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
123 126first strand
Strand 2
A
196 199anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
256 257first strand
Strand 2
A
374 378anti-parallel
Strand 3
A
381 385anti-parallel
Strand 4
A
417 420anti-parallel
Strand 5
A
329 333anti-parallel
Strand 6
A
284 297anti-parallel
Strand 7
A
271 273anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
256 257first strand
Strand 2
A
374 378anti-parallel
Strand 3
A
381 385anti-parallel
Strand 4
A
417 420anti-parallel
Strand 5
A
329 333anti-parallel
Strand 6
A
284 297anti-parallel
Strand 7
A
444 454anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
357 361first strand
Strand 2
A
465 468parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
3 5first strand
Strand 2
D
92 96parallel
Strand 3
D
80 83anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
39 40first strand
Strand 2
D
43 44anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
99 102first strand
Strand 2
D
114 119anti-parallel
Strand 3
D
145 146anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
127 129first strand
Strand 2
D
160 163anti-parallel
Strand 3
D
166 168anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
35 39first strand
Strand 2
B
495 499anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
53 55first strand
Strand 2
B
216 218anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
84 85first strand
Strand 2
B
242 245anti-parallel
Strand 3
B
224 228anti-parallel
Strand 4
B
487 489anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
196 202first strand
Strand 2
B
120 126anti-parallel
Strand 3
B
432 434anti-parallel
Strand 4
B
423 425anti-parallel
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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
271 273first strand
Strand 2
B
284 298anti-parallel
Strand 3
B
443 456anti-parallel
Strand 4
B
465 470anti-parallel
Strand 5
B
357 361parallel
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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
271 273first strand
Strand 2
B
284 298anti-parallel
Strand 3
B
329 333anti-parallel
Strand 4
B
414 420anti-parallel
Strand 5
B
382 385anti-parallel
Strand 6
B
374 377anti-parallel
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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
2 5first strand
Strand 2
E
92 96parallel
Strand 3
E
81 84anti-parallel
Strand 4
E
28 29anti-parallel
Strand 5
E
35 37anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
39 40first strand
Strand 2
E
43 44anti-parallel
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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
99 102first strand
Strand 2
E
112 119anti-parallel
Strand 3
E
145 149anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
139 140first strand
Strand 2
E
127 131anti-parallel
Strand 3
E
158 163anti-parallel
Strand 4
E
166 168anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
84 85first strand
Strand 2
C
242 245anti-parallel
Strand 3
C
224 228anti-parallel
Strand 4
C
487 489anti-parallel
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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
125 126first strand
Strand 2
C
196 197anti-parallel
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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
271 273first strand
Strand 2
C
284 287anti-parallel
Strand 3
C
451 457anti-parallel
Strand 4
C
465 470anti-parallel
Strand 5
C
357 361parallel
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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
374 378first strand
Strand 2
C
381 385anti-parallel
Strand 3
C
413 421anti-parallel
Strand 4
C
329 334anti-parallel
Strand 5
C
294 298anti-parallel
Strand 6
C
443 447anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
2 6first strand
Strand 2
F
91 97parallel
Strand 3
F
82 84anti-parallel
Strand 4
F
28 29anti-parallel
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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
12 14first strand
Strand 2
F
69 71anti-parallel
Strand 3
F
55 57anti-parallel
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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
37 38first strand
Strand 2
F
45 46anti-parallel
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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
99 102first strand
Strand 2
F
112 119anti-parallel
Strand 3
F
145 149anti-parallel
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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
139 140first strand
Strand 2
F
127 131anti-parallel
Strand 3
F
158 163anti-parallel
Strand 4
F
166 168anti-parallel
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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 93anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 52anti-parallel
Strand 6
H
56 59anti-parallel
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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
10 14first strand
Strand 2
L
102 107parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
5 6first strand
Strand 2
I
18 23anti-parallel
Strand 3
I
77 82anti-parallel
Strand 4
I
67 70anti-parallel
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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
10 12first strand
Strand 2
I
107 111parallel
Strand 3
I
88 92anti-parallel
Strand 4
I
34 39anti-parallel
Strand 5
I
46 52anti-parallel
Strand 6
I
56 59anti-parallel
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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
4 7first strand
Strand 2
J
19 25anti-parallel
Strand 3
J
70 75anti-parallel
Strand 4
J
62 67anti-parallel
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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
12 14first strand
Strand 2
J
102 107parallel
Strand 3
J
84 90anti-parallel
Strand 4
J
33 38anti-parallel
Strand 5
J
45 49anti-parallel
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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
3 6first strand
Strand 2
P
18 25anti-parallel
Strand 3
P
78 82anti-parallel
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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
10 12first strand
Strand 2
P
107 111parallel
Strand 3
P
88 92anti-parallel
Strand 4
P
36 40anti-parallel
Strand 5
P
44 52anti-parallel
Strand 6
P
56 59anti-parallel
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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
4 7first strand
Strand 2
Q
19 25anti-parallel
Strand 3
Q
70 75anti-parallel
Strand 4
Q
62 67anti-parallel
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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
10 14first strand
Strand 2
Q
102 107parallel
Strand 3
Q
84 90anti-parallel
Strand 4
Q
33 38anti-parallel
Strand 5
Q
45 49anti-parallel
Strand 6
Q
53 54anti-parallel
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