Analysis of interatomic Contacts of Structural Units in PDB entry:
8D5V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D5V entry

There are 4 chains in PDB entry 8D5V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 8VAL 91
B
 PHE 453ALA 549
C
 VAL 9ARG 90
D
 THR 454GLU 547
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8D5V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 17Right-handed 310
Helix 2
AA2
A
18 23Right-handed alpha
Helix 3
AA3
A
26 35Right-handed alpha
Helix 4
AA4
A
38 49Right-handed alpha
Helix 5
AA5
A
64 82Right-handed alpha
Helix 6
AA6
A
87 91Right-handed 310
Helix 7
AA7
B
455 465Right-handed alpha
Helix 8
AA8
B
468 479Right-handed alpha
Helix 9
AA9
B
488 495Right-handed alpha
Helix 10
AB1
B
496 498Right-handed 310
Helix 11
AB2
B
499 516Right-handed alpha
Helix 12
AB3
B
516 525Right-handed alpha
Helix 13
AB4
B
526 531Right-handed alpha
Helix 14
AB5
B
535 546Right-handed alpha
Helix 15
AB6
C
12 17Right-handed 310
Helix 16
AB7
C
18 23Right-handed alpha
Helix 17
AB8
C
26 35Right-handed alpha
Helix 18
AB9
C
38 49Right-handed alpha
Helix 19
AC1
C
64 82Right-handed alpha
Helix 20
AC2
D
455 466Right-handed alpha
Helix 21
AC3
D
468 479Right-handed alpha
Helix 22
AC4
D
488 497Right-handed alpha
Helix 23
AC5
D
499 516Right-handed alpha
Helix 24
AC6
D
516 521Right-handed alpha
Helix 25
AC7
D
523 525Right-handed 310
Helix 26
AC8
D
526 531Right-handed alpha
Helix 27
AC9
D
535 546Right-handed alpha
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There are 2 sheets in PDB entry 8D5V. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
59 61anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 56first strand
Strand 2
C
59 61anti-parallel
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