Analysis of interatomic Contacts of Structural Units in PDB entry:
8D66

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D66 entry

There are 5 chains in PDB entry 8D66 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 11	ILE 317
B	PRO 11	ILE 317
C	PRO 11	ILE 317
D	PRO 11	ILE 317
E	PRO 11	ILE 317

There are 40 helices in PDB entry 8D66. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	70	Right-handed alpha
Helix 2	AA2	A	149	153	Right-handed 310
Helix 3	AA3	A	201	209	Right-handed alpha
Helix 4	AA4	A	209	221	Right-handed alpha
Helix 5	AA5	A	222	225	Right-handed 310
Helix 6	AA6	A	227	249	Right-handed alpha
Helix 7	AA7	A	260	285	Right-handed alpha
Helix 8	AA8	A	302	317	Right-handed alpha
Helix 9	AA9	B	62	70	Right-handed alpha
Helix 10	AB1	B	149	153	Right-handed 310
Helix 11	AB2	B	201	209	Right-handed alpha
Helix 12	AB3	B	209	221	Right-handed alpha
Helix 13	AB4	B	222	225	Right-handed 310
Helix 14	AB5	B	227	249	Right-handed alpha
Helix 15	AB6	B	260	285	Right-handed alpha
Helix 16	AB7	B	302	317	Right-handed alpha
Helix 17	AB8	C	62	70	Right-handed alpha
Helix 18	AB9	C	149	153	Right-handed 310
Helix 19	AC1	C	201	209	Right-handed alpha
Helix 20	AC2	C	209	221	Right-handed alpha
Helix 21	AC3	C	222	225	Right-handed 310
Helix 22	AC4	C	227	249	Right-handed alpha
Helix 23	AC5	C	260	285	Right-handed alpha
Helix 24	AC6	C	302	317	Right-handed alpha
Helix 25	AC7	D	62	70	Right-handed alpha
Helix 26	AC8	D	149	153	Right-handed 310
Helix 27	AC9	D	201	209	Right-handed alpha
Helix 28	AD1	D	209	221	Right-handed alpha
Helix 29	AD2	D	222	225	Right-handed 310
Helix 30	AD3	D	227	249	Right-handed alpha
Helix 31	AD4	D	260	285	Right-handed alpha
Helix 32	AD5	D	302	317	Right-handed alpha
Helix 33	AD6	E	62	70	Right-handed alpha
Helix 34	AD7	E	149	153	Right-handed 310
Helix 35	AD8	E	201	209	Right-handed alpha
Helix 36	AD9	E	209	221	Right-handed alpha
Helix 37	AE1	E	222	225	Right-handed 310
Helix 38	AE2	E	227	249	Right-handed alpha
Helix 39	AE3	E	260	285	Right-handed alpha
Helix 40	AE4	E	302	317	Right-handed alpha

There are 10 sheets in PDB entry 8D66. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	58	first strand
Strand 2	A	90	94	anti-parallel
Strand 3	A	99	111	anti-parallel
Strand 4	A	32	44	anti-parallel
Strand 5	A	12	27	anti-parallel
Strand 6	A	140	147	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	187	199	anti-parallel
Strand 4	A	160	174	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	90	94	anti-parallel
Strand 3	B	99	111	anti-parallel
Strand 4	B	32	44	anti-parallel
Strand 5	B	12	27	anti-parallel
Strand 6	B	140	147	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	123	132	anti-parallel
Strand 3	B	187	199	anti-parallel
Strand 4	B	160	174	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	58	first strand
Strand 2	C	90	94	anti-parallel
Strand 3	C	99	111	anti-parallel
Strand 4	C	32	44	anti-parallel
Strand 5	C	12	27	anti-parallel
Strand 6	C	140	147	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	123	132	anti-parallel
Strand 3	C	187	199	anti-parallel
Strand 4	C	160	174	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	58	first strand
Strand 2	D	90	94	anti-parallel
Strand 3	D	99	111	anti-parallel
Strand 4	D	32	44	anti-parallel
Strand 5	D	12	27	anti-parallel
Strand 6	D	140	147	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	123	132	anti-parallel
Strand 3	D	187	199	anti-parallel
Strand 4	D	160	174	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	58	first strand
Strand 2	E	90	94	anti-parallel
Strand 3	E	99	111	anti-parallel
Strand 4	E	32	44	anti-parallel
Strand 5	E	12	27	anti-parallel
Strand 6	E	140	147	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	187	199	anti-parallel
Strand 4	E	160	174	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D66

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D66