Analysis of interatomic Contacts of Structural Units in PDB entry:
8D6A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D6A entry

There are 3 chains in PDB entry 8D6A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	CYS 34	PHE 202
A	LEU 124	LYS 515
B	VAL 132	ALA 533

There are 7 helices in PDB entry 8D6A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	43	70	Right-handed alpha
Helix 2	AA2	D	72	77	Right-handed alpha
Helix 3	AA3	D	77	82	Right-handed alpha
Helix 4	AA4	D	97	127	Right-handed alpha
Helix 5	AA5	D	131	159	Right-handed alpha
Helix 6	AA6	D	176	202	Right-handed alpha
Helix 7	AA7	A	247	252	Right-handed 310

There are 21 sheets in PDB entry 8D6A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	144	first strand
Strand 2	A	134	137	anti-parallel
Strand 3	A	220	221	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	160	first strand
Strand 2	A	172	173	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	212	214	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	200	first strand
Strand 2	A	207	208	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	232	first strand
Strand 2	A	240	245	anti-parallel
Strand 3	A	283	286	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	271	first strand
Strand 2	A	255	263	anti-parallel
Strand 3	A	295	303	anti-parallel
Strand 4	A	317	318	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	336	first strand
Strand 2	A	345	351	anti-parallel
Strand 3	A	387	391	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	380	first strand
Strand 2	A	365	370	anti-parallel
Strand 3	A	396	403	anti-parallel
Strand 4	A	414	416	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	433	first strand
Strand 2	A	440	442	anti-parallel
Strand 3	A	479	481	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	473	first strand
Strand 2	A	452	459	anti-parallel
Strand 3	A	492	500	anti-parallel
Strand 4	A	503	504	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	473	first strand
Strand 2	A	452	459	anti-parallel
Strand 3	A	492	500	anti-parallel
Strand 4	A	508	512	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	134	first strand
Strand 2	B	232	233	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	147	first strand
Strand 2	B	152	158	anti-parallel
Strand 3	B	200	206	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	192	first strand
Strand 2	B	169	178	anti-parallel
Strand 3	B	216	225	anti-parallel
Strand 4	B	242	244	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	255	first strand
Strand 2	B	267	271	anti-parallel
Strand 3	B	297	301	anti-parallel
Strand 4	B	290	291	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	262	first strand
Strand 2	B	322	330	parallel
Strand 3	B	312	317	anti-parallel
Strand 4	B	279	281	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	340	first strand
Strand 2	B	352	354	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	350	first strand
Strand 2	B	396	398	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	381	first strand
Strand 2	B	368	373	anti-parallel
Strand 3	B	406	413	anti-parallel
Strand 4	B	418	425	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	440	first strand
Strand 2	B	452	454	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	481	first strand
Strand 2	B	465	471	anti-parallel
Strand 3	B	506	512	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D6A

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D6A