Analysis of interatomic Contacts of Structural Units in PDB entry:
8D6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D6J entry

There are 2 chains in PDB entry 8D6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 23ALA 859
B
 U 1 U 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8D6J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 82Right-handed alpha
Helix 2
AA2
A
140 148Right-handed alpha
Helix 3
AA3
A
155 174Right-handed alpha
Helix 4
AA4
A
229 238Right-handed alpha
Helix 5
AA5
A
242 246Right-handed 310
Helix 6
AA6
A
251 263Right-handed alpha
Helix 7
AA7
A
308 315Right-handed alpha
Helix 8
AA8
A
357 369Right-handed alpha
Helix 9
AA9
A
371 387Right-handed alpha
Helix 10
AB1
A
388 390Right-handed 310
Helix 11
AB2
A
391 397Right-handed alpha
Helix 12
AB3
A
463 481Right-handed alpha
Helix 13
AB4
A
497 499Right-handed 310
Helix 14
AB5
A
500 512Right-handed alpha
Helix 15
AB6
A
527 538Right-handed alpha
Helix 16
AB7
A
549 554Right-handed alpha
Helix 17
AB8
A
556 571Right-handed alpha
Helix 18
AB9
A
580 583Right-handed 310
Helix 19
AC1
A
584 588Right-handed 310
Helix 20
AC2
A
641 658Right-handed alpha
Helix 21
AC3
A
675 693Right-handed alpha
Helix 22
AC4
A
719 723Right-handed 310
Helix 23
AC5
A
775 787Right-handed alpha
Helix 24
AC6
A
800 815Right-handed alpha
Helix 25
AC7
A
838 846Right-handed alpha
Helix 26
AC8
A
849 854Right-handed alpha
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There are 8 sheets in PDB entry 8D6J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
625 632first strand
Strand 2
A
610 617anti-parallel
Strand 3
A
591 599anti-parallel
Strand 4
A
663 669parallel
Strand 5
A
701 708parallel
Strand 6
A
763 770anti-parallel
Strand 7
A
747 751anti-parallel
Strand 8
A
734 736anti-parallel
Strand 9
A
406 412anti-parallel
Strand 10
A
36 42anti-parallel
Strand 11
A
715 717anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
180 182anti-parallel
Strand 3
A
196 209anti-parallel
Strand 4
A
191 193anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
180 182anti-parallel
Strand 3
A
196 209anti-parallel
Strand 4
A
212 225anti-parallel
Strand 5
A
44 48anti-parallel
Strand 6
A
400 401anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
99 102anti-parallel
Strand 3
A
53 62anti-parallel
Strand 4
A
126 139anti-parallel
Strand 5
A
112 119anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 340first strand
Strand 2
A
326 330anti-parallel
Strand 3
A
278 288anti-parallel
Strand 4
A
266 269anti-parallel
Strand 5
A
344 346anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 297first strand
Strand 2
A
303 307anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 428first strand
Strand 2
A
418 419anti-parallel
Strand 3
A
577 578anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
491 494first strand
Strand 2
A
451 455parallel
Strand 3
A
517 522parallel
Strand 4
A
543 548parallel
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