Analysis of interatomic Contacts of Structural Units in PDB entry:
8D6P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D6P entry

There are 2 chains in PDB entry 8D6P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 5	LEU 832
B	LYS 5	TRP 489

There are 63 helices in PDB entry 8D6P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	27	Right-handed alpha
Helix 2	AA2	A	41	51	Right-handed alpha
Helix 3	AA3	A	60	64	Right-handed 310
Helix 4	AA4	A	89	100	Right-handed alpha
Helix 5	AA5	A	159	166	Right-handed alpha
Helix 6	AA6	A	248	252	Right-handed 310
Helix 7	AA7	A	264	267	Right-handed 310
Helix 8	AA8	A	268	278	Right-handed alpha
Helix 9	AA9	A	290	299	Right-handed alpha
Helix 10	AB1	A	309	314	Right-handed 310
Helix 11	AB2	A	333	344	Right-handed alpha
Helix 12	AB3	A	355	357	Right-handed 310
Helix 13	AB4	A	358	362	Right-handed 310
Helix 14	AB5	A	376	380	Right-handed 310
Helix 15	AB6	A	401	415	Right-handed alpha
Helix 16	AB7	A	445	451	Right-handed alpha
Helix 17	AB8	A	451	463	Right-handed alpha
Helix 18	AB9	A	479	494	Right-handed alpha
Helix 19	AC1	A	504	514	Right-handed alpha
Helix 20	AC2	A	523	525	Right-handed 310
Helix 21	AC3	A	526	533	Right-handed alpha
Helix 22	AC4	A	598	609	Right-handed alpha
Helix 23	AC5	A	613	618	Right-handed alpha
Helix 24	AC6	A	630	634	Right-handed 310
Helix 25	AC7	A	658	670	Right-handed alpha
Helix 26	AC8	A	678	685	Right-handed alpha
Helix 27	AC9	A	698	700	Right-handed 310
Helix 28	AD1	A	736	752	Right-handed alpha
Helix 29	AD2	A	790	796	Right-handed alpha
Helix 30	AD3	A	797	805	Right-handed alpha
Helix 31	AD4	A	814	820	Right-handed alpha
Helix 32	AD5	A	828	832	Right-handed 310
Helix 33	AD6	B	13	27	Right-handed alpha
Helix 34	AD7	B	41	51	Right-handed alpha
Helix 35	AD8	B	60	62	Right-handed 310
Helix 36	AD9	B	63	69	Right-handed alpha
Helix 37	AE1	B	89	101	Right-handed alpha
Helix 38	AE2	B	159	166	Right-handed alpha
Helix 39	AE3	B	248	252	Right-handed 310
Helix 40	AE4	B	268	278	Right-handed alpha
Helix 41	AE5	B	290	299	Right-handed alpha
Helix 42	AE6	B	309	314	Right-handed 310
Helix 43	AE7	B	333	344	Right-handed alpha
Helix 44	AE8	B	355	357	Right-handed 310
Helix 45	AE9	B	358	362	Right-handed 310
Helix 46	AF1	B	376	380	Right-handed 310
Helix 47	AF2	B	401	415	Right-handed alpha
Helix 48	AF3	B	445	451	Right-handed alpha
Helix 49	AF4	B	451	463	Right-handed alpha
Helix 50	AF5	B	479	492	Right-handed alpha
Helix 51	AF6	B	504	514	Right-handed alpha
Helix 52	AF7	B	526	533	Right-handed alpha
Helix 53	AF8	B	548	553	Right-handed alpha
Helix 54	AF9	B	598	609	Right-handed alpha
Helix 55	AG1	B	630	634	Right-handed 310
Helix 56	AG2	B	639	643	Right-handed 310
Helix 57	AG3	B	658	670	Right-handed alpha
Helix 58	AG4	B	678	685	Right-handed alpha
Helix 59	AG5	B	698	702	Right-handed 310
Helix 60	AG6	B	736	752	Right-handed alpha
Helix 61	AG7	B	790	797	Right-handed alpha
Helix 62	AG8	B	797	805	Right-handed alpha
Helix 63	AG9	B	814	820	Right-handed alpha

There are 20 sheets in PDB entry 8D6P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	11	first strand
Strand 2	A	33	38	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	59	first strand
Strand 2	A	392	396	anti-parallel
Strand 3	A	74	79	anti-parallel
Strand 4	A	438	439	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	122	first strand
Strand 2	A	129	131	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	194	first strand
Strand 2	A	201	203	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	232	first strand
Strand 2	A	822	826	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	303	first strand
Strand 2	A	257	259	parallel
Strand 3	A	349	353	parallel
Strand 4	A	237	242	anti-parallel
Strand 5	A	365	369	anti-parallel
Strand 6	A	373	375	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	477	first strand
Strand 2	A	497	501	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	519	522	first strand
Strand 2	A	729	732	anti-parallel
Strand 3	A	536	542	anti-parallel
Strand 4	A	780	783	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	587	589	first strand
Strand 2	A	673	677	parallel
Strand 3	A	565	571	anti-parallel
Strand 4	A	702	705	anti-parallel
Strand 5	A	711	712	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	587	589	first strand
Strand 2	A	673	677	parallel
Strand 3	A	565	571	anti-parallel
Strand 4	A	723	724	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	33	38	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	59	first strand
Strand 2	B	392	396	anti-parallel
Strand 3	B	74	79	anti-parallel
Strand 4	B	438	439	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	122	first strand
Strand 2	B	129	131	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	194	first strand
Strand 2	B	201	203	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	230	first strand
Strand 2	B	822	824	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	259	first strand
Strand 2	B	349	353	parallel
Strand 3	B	237	242	anti-parallel
Strand 4	B	365	368	anti-parallel
Strand 5	B	374	375	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	477	first strand
Strand 2	B	497	501	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	519	522	first strand
Strand 2	B	729	732	anti-parallel
Strand 3	B	536	542	anti-parallel
Strand 4	B	780	783	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	587	588	first strand
Strand 2	B	673	677	parallel
Strand 3	B	565	570	anti-parallel
Strand 4	B	703	705	anti-parallel
Strand 5	B	711	712	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	587	588	first strand
Strand 2	B	673	677	parallel
Strand 3	B	565	570	anti-parallel
Strand 4	B	723	724	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D6P

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D6P