Analysis of interatomic Contacts of Structural Units in PDB entry:
8D7E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D7E entry

There are 5 chains in PDB entry 8D7E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ARG 24	GLU 305
G	GLU 1	CYS 215
F	GLN 1	SER 217
E	ASP 1	CYS 215
D	GLN 1	SER 220

There are 15 helices in PDB entry 8D7E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	65	67	Right-handed 310
Helix 2	AA2	G	29	32	Right-handed 310
Helix 3	AA3	G	80	84	Right-handed 310
Helix 4	AA4	G	122	129	Right-handed alpha
Helix 5	AA5	G	184	188	Right-handed alpha
Helix 6	AA6	F	28	32	Right-handed 310
Helix 7	AA7	F	87	91	Right-handed 310
Helix 8	AA8	F	191	194	Right-handed 310
Helix 9	AA9	E	79	83	Right-handed 310
Helix 10	AB1	E	122	127	Right-handed alpha
Helix 11	AB2	E	184	190	Right-handed alpha
Helix 12	AB3	D	28	32	Right-handed 310
Helix 13	AB4	D	87	91	Right-handed 310
Helix 14	AB5	D	163	165	Right-handed 310
Helix 15	AB6	D	194	196	Right-handed 310

There are 26 sheets in PDB entry 8D7E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	37	first strand
Strand 2	C	97	106	parallel
Strand 3	C	85	91	anti-parallel
Strand 4	C	55	59	anti-parallel
Strand 5	C	62	63	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	44	first strand
Strand 2	C	73	76	anti-parallel
Strand 3	C	69	70	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	117	first strand
Strand 2	C	126	130	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	151	first strand
Strand 2	C	140	147	anti-parallel
Strand 3	C	177	184	anti-parallel
Strand 4	C	189	196	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	213	first strand
Strand 2	C	223	225	anti-parallel
Strand 3	C	264	266	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	241	first strand
Strand 2	C	283	284	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	258	first strand
Strand 2	C	243	248	anti-parallel
Strand 3	C	276	280	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	7	first strand
Strand 2	G	19	24	anti-parallel
Strand 3	G	71	76	anti-parallel
Strand 4	G	63	68	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	103	107	parallel
Strand 3	G	86	91	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	46	50	anti-parallel
Strand 6	G	54	55	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	103	107	parallel
Strand 3	G	86	91	anti-parallel
Strand 4	G	98	99	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	115	119	first strand
Strand 2	G	130	140	anti-parallel
Strand 3	G	174	183	anti-parallel
Strand 4	G	160	164	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	146	150	first strand
Strand 2	G	192	198	anti-parallel
Strand 3	G	206	211	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	17	25	anti-parallel
Strand 3	F	78	84	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	111	115	parallel
Strand 3	F	92	97	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	124	128	first strand
Strand 2	F	139	149	anti-parallel
Strand 3	F	180	189	anti-parallel
Strand 4	F	167	169	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	124	128	first strand
Strand 2	F	139	149	anti-parallel
Strand 3	F	180	189	anti-parallel
Strand 4	F	173	174	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	155	158	first strand
Strand 2	F	199	204	anti-parallel
Strand 3	F	209	214	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	7	first strand
Strand 2	E	19	29	anti-parallel
Strand 3	E	62	75	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	103	107	parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	33	38	anti-parallel
Strand 5	E	45	49	anti-parallel
Strand 6	E	53	54	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	119	first strand
Strand 2	E	130	140	anti-parallel
Strand 3	E	174	183	anti-parallel
Strand 4	E	160	164	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	150	first strand
Strand 2	E	192	198	anti-parallel
Strand 3	E	210	211	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	46	51	anti-parallel
Strand 3	D	34	39	anti-parallel
Strand 4	D	92	99	anti-parallel
Strand 5	D	107	110	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	46	51	anti-parallel
Strand 3	D	34	39	anti-parallel
Strand 4	D	92	99	anti-parallel
Strand 5	D	114	116	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	131	first strand
Strand 2	D	142	152	anti-parallel
Strand 3	D	183	192	anti-parallel
Strand 4	D	170	172	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	161	first strand
Strand 2	D	201	207	anti-parallel
Strand 3	D	212	218	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D7E

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D7E