Analysis of interatomic Contacts of Structural Units in PDB entry:
8D7F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D7F entry

There are 8 chains in PDB entry 8D7F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 5	ASN 366
B	ARG 5	ALA 365
C	ASN 0	ASN 366
D	ASN 0	ALA 365
E	ARG 5	ALA 365
F	ARG 5	ASN 366
G	ASN 0	GLU 361
H	ASN 0	ASN 366

There are134 helices in PDB entry 8D7F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	51	Right-handed alpha
Helix 2	AA2	A	52	55	Right-handed 310
Helix 3	AA3	A	67	73	Right-handed alpha
Helix 4	AA4	A	77	92	Right-handed alpha
Helix 5	AA5	A	97	105	Right-handed alpha
Helix 6	AA6	A	117	121	Right-handed 310
Helix 7	AA7	A	122	144	Right-handed alpha
Helix 8	AA8	A	147	160	Right-handed alpha
Helix 9	AA9	A	164	168	Right-handed 310
Helix 10	AB1	A	173	185	Right-handed alpha
Helix 11	AB2	A	186	198	Right-handed alpha
Helix 12	AB3	A	203	240	Right-handed alpha
Helix 13	AB4	A	248	258	Right-handed alpha
Helix 14	AB5	A	260	290	Right-handed alpha
Helix 15	AB6	A	291	295	Right-handed 310
Helix 16	AB7	A	296	318	Right-handed alpha
Helix 17	AB8	A	326	330	Right-handed 310
Helix 18	AB9	A	331	341	Right-handed alpha
Helix 19	AC1	B	34	51	Right-handed alpha
Helix 20	AC2	B	67	73	Right-handed alpha
Helix 21	AC3	B	77	92	Right-handed alpha
Helix 22	AC4	B	97	106	Right-handed alpha
Helix 23	AC5	B	117	121	Right-handed 310
Helix 24	AC6	B	122	144	Right-handed alpha
Helix 25	AC7	B	147	160	Right-handed alpha
Helix 26	AC8	B	164	168	Right-handed 310
Helix 27	AC9	B	173	185	Right-handed alpha
Helix 28	AD1	B	186	198	Right-handed alpha
Helix 29	AD2	B	203	239	Right-handed alpha
Helix 30	AD3	B	248	258	Right-handed alpha
Helix 31	AD4	B	260	290	Right-handed alpha
Helix 32	AD5	B	291	295	Right-handed 310
Helix 33	AD6	B	296	318	Right-handed alpha
Helix 34	AD7	B	326	330	Right-handed 310
Helix 35	AD8	B	331	341	Right-handed alpha
Helix 36	AD9	C	34	51	Right-handed alpha
Helix 37	AE1	C	52	55	Right-handed 310
Helix 38	AE2	C	67	73	Right-handed alpha
Helix 39	AE3	C	77	92	Right-handed alpha
Helix 40	AE4	C	122	144	Right-handed alpha
Helix 41	AE5	C	147	160	Right-handed alpha
Helix 42	AE6	C	164	169	Right-handed alpha
Helix 43	AE7	C	173	185	Right-handed alpha
Helix 44	AE8	C	186	198	Right-handed alpha
Helix 45	AE9	C	203	238	Right-handed alpha
Helix 46	AF1	C	248	258	Right-handed alpha
Helix 47	AF2	C	260	290	Right-handed alpha
Helix 48	AF3	C	291	295	Right-handed 310
Helix 49	AF4	C	296	318	Right-handed alpha
Helix 50	AF5	C	326	330	Right-handed 310
Helix 51	AF6	C	331	341	Right-handed alpha
Helix 52	AF7	D	34	51	Right-handed alpha
Helix 53	AF8	D	52	55	Right-handed 310
Helix 54	AF9	D	67	73	Right-handed alpha
Helix 55	AG1	D	77	92	Right-handed alpha
Helix 56	AG2	D	93	98	Right-handed alpha
Helix 57	AG3	D	122	144	Right-handed alpha
Helix 58	AG4	D	147	160	Right-handed alpha
Helix 59	AG5	D	164	168	Right-handed 310
Helix 60	AG6	D	173	185	Right-handed alpha
Helix 61	AG7	D	186	198	Right-handed alpha
Helix 62	AG8	D	203	238	Right-handed alpha
Helix 63	AG9	D	248	258	Right-handed alpha
Helix 64	AH1	D	260	290	Right-handed alpha
Helix 65	AH2	D	291	295	Right-handed 310
Helix 66	AH3	D	296	318	Right-handed alpha
Helix 67	AH4	D	326	330	Right-handed 310
Helix 68	AH5	D	331	341	Right-handed alpha
Helix 69	AH6	D	348	352	Right-handed 310
Helix 70	AH7	E	34	51	Right-handed alpha
Helix 71	AH8	E	67	73	Right-handed alpha
Helix 72	AH9	E	77	92	Right-handed alpha
Helix 73	AI1	E	122	144	Right-handed alpha
Helix 74	AI2	E	146	160	Right-handed alpha
Helix 75	AI3	E	164	168	Right-handed 310
Helix 76	AI4	E	173	185	Right-handed alpha
Helix 77	AI5	E	186	198	Right-handed alpha
Helix 78	AI6	E	203	238	Right-handed alpha
Helix 79	AI7	E	248	258	Right-handed alpha
Helix 80	AI8	E	260	290	Right-handed alpha
Helix 81	AI9	E	291	295	Right-handed 310
Helix 82	AJ1	E	296	318	Right-handed alpha
Helix 83	AJ2	E	326	330	Right-handed 310
Helix 84	AJ3	E	331	341	Right-handed alpha
Helix 85	AJ4	F	34	51	Right-handed alpha
Helix 86	AJ5	F	52	55	Right-handed 310
Helix 87	AJ6	F	67	73	Right-handed alpha
Helix 88	AJ7	F	77	92	Right-handed alpha
Helix 89	AJ8	F	93	98	Right-handed alpha
Helix 90	AJ9	F	122	144	Right-handed alpha
Helix 91	AK1	F	147	160	Right-handed alpha
Helix 92	AK2	F	164	168	Right-handed 310
Helix 93	AK3	F	173	185	Right-handed alpha
Helix 94	AK4	F	186	198	Right-handed alpha
Helix 95	AK5	F	203	209	Right-handed alpha
Helix 96	AK6	F	210	241	Right-handed alpha
Helix 97	AK7	F	248	258	Right-handed alpha
Helix 98	AK8	F	260	290	Right-handed alpha
Helix 99	AK9	F	291	295	Right-handed 310
Helix 100	AL1	F	296	318	Right-handed alpha
Helix 101	AL2	F	326	330	Right-handed 310
Helix 102	AL3	F	331	341	Right-handed alpha
Helix 103	AL4	F	348	352	Right-handed 310
Helix 104	AL5	G	34	51	Right-handed alpha
Helix 105	AL6	G	67	73	Right-handed alpha
Helix 106	AL7	G	77	92	Right-handed alpha
Helix 107	AL8	G	125	144	Right-handed alpha
Helix 108	AL9	G	147	160	Right-handed alpha
Helix 109	AM1	G	164	169	Right-handed alpha
Helix 110	AM2	G	173	185	Right-handed alpha
Helix 111	AM3	G	186	198	Right-handed alpha
Helix 112	AM4	G	203	238	Right-handed alpha
Helix 113	AM5	G	248	258	Right-handed alpha
Helix 114	AM6	G	260	290	Right-handed alpha
Helix 115	AM7	G	291	295	Right-handed 310
Helix 116	AM8	G	296	318	Right-handed alpha
Helix 117	AM9	G	328	330	Right-handed 310
Helix 118	AN1	G	331	340	Right-handed alpha
Helix 119	AN2	H	34	51	Right-handed alpha
Helix 120	AN3	H	52	55	Right-handed 310
Helix 121	AN4	H	67	73	Right-handed alpha
Helix 122	AN5	H	77	92	Right-handed alpha
Helix 123	AN6	H	124	144	Right-handed alpha
Helix 124	AN7	H	147	160	Right-handed alpha
Helix 125	AN8	H	164	169	Right-handed alpha
Helix 126	AN9	H	173	185	Right-handed alpha
Helix 127	AO1	H	186	199	Right-handed alpha
Helix 128	AO2	H	203	239	Right-handed alpha
Helix 129	AO3	H	240	244	Right-handed 310
Helix 130	AO4	H	248	258	Right-handed alpha
Helix 131	AO5	H	260	290	Right-handed alpha
Helix 132	AO6	H	291	295	Right-handed 310
Helix 133	AO7	H	296	318	Right-handed alpha
Helix 134	AO8	H	332	341	Right-handed alpha

There are 8 sheets in PDB entry 8D7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	30	32	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	30	32	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	11	first strand
Strand 2	C	30	32	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	11	first strand
Strand 2	D	30	32	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	11	first strand
Strand 2	E	30	32	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	11	first strand
Strand 2	F	30	32	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	11	first strand
Strand 2	G	30	32	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	11	first strand
Strand 2	H	30	32	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D7F

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D7F