Analysis of interatomic Contacts of Structural Units in PDB entry:
8D7H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D7H entry

There are 6 chains in PDB entry 8D7H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ARG 24	GLU 305
D	PRO 34	PRO 211
A	HIS 39	SER 341
G	ARG 24	GLU 305
H	PRO 34	PRO 211
E	HIS 39	SER 341

There are 22 helices in PDB entry 8D7H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	65	67	Right-handed 310
Helix 2	AA2	C	80	84	Right-handed 310
Helix 3	AA3	D	35	66	Right-handed alpha
Helix 4	AA4	D	67	71	Right-handed 310
Helix 5	AA5	D	90	97	Right-handed alpha
Helix 6	AA6	D	100	120	Right-handed alpha
Helix 7	AA7	D	121	123	Right-handed 310
Helix 8	AA8	D	126	154	Right-handed alpha
Helix 9	AA9	D	176	208	Right-handed alpha
Helix 10	AB1	A	69	74	Right-handed alpha
Helix 11	AB2	A	228	231	Right-handed 310
Helix 12	AB3	G	65	67	Right-handed 310
Helix 13	AB4	G	80	84	Right-handed 310
Helix 14	AB5	H	35	66	Right-handed alpha
Helix 15	AB6	H	67	71	Right-handed 310
Helix 16	AB7	H	90	97	Right-handed alpha
Helix 17	AB8	H	100	120	Right-handed alpha
Helix 18	AB9	H	121	123	Right-handed 310
Helix 19	AC1	H	126	154	Right-handed alpha
Helix 20	AC2	H	176	208	Right-handed alpha
Helix 21	AC3	E	69	74	Right-handed alpha
Helix 22	AC4	E	228	231	Right-handed 310

There are 26 sheets in PDB entry 8D7H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	36	first strand
Strand 2	C	97	105	parallel
Strand 3	C	85	91	anti-parallel
Strand 4	C	55	59	anti-parallel
Strand 5	C	62	63	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	45	first strand
Strand 2	C	73	77	anti-parallel
Strand 3	C	69	70	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	114	first strand
Strand 2	C	129	130	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	145	first strand
Strand 2	C	177	184	anti-parallel
Strand 3	C	189	196	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	214	first strand
Strand 2	C	222	225	anti-parallel
Strand 3	C	264	267	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	258	first strand
Strand 2	C	243	248	anti-parallel
Strand 3	C	276	281	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	44	first strand
Strand 2	A	56	61	anti-parallel
Strand 3	A	95	100	anti-parallel
Strand 4	A	88	92	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	51	first strand
Strand 2	A	123	132	parallel
Strand 3	A	112	117	anti-parallel
Strand 4	A	75	78	anti-parallel
Strand 5	A	81	82	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	187	first strand
Strand 2	A	194	197	anti-parallel
Strand 3	A	151	156	anti-parallel
Strand 4	A	139	146	anti-parallel
Strand 5	A	233	234	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	183	first strand
Strand 2	A	168	175	anti-parallel
Strand 3	A	207	214	anti-parallel
Strand 4	A	219	221	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	183	first strand
Strand 2	A	168	175	anti-parallel
Strand 3	A	207	214	anti-parallel
Strand 4	A	225	227	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	244	first strand
Strand 2	A	254	256	anti-parallel
Strand 3	A	295	296	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	286	first strand
Strand 2	A	270	278	anti-parallel
Strand 3	A	306	315	anti-parallel
Strand 4	A	334	337	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	36	first strand
Strand 2	G	97	105	parallel
Strand 3	G	85	91	anti-parallel
Strand 4	G	55	59	anti-parallel
Strand 5	G	62	63	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	41	45	first strand
Strand 2	G	73	77	anti-parallel
Strand 3	G	69	70	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	113	114	first strand
Strand 2	G	129	130	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	140	145	first strand
Strand 2	G	177	184	anti-parallel
Strand 3	G	189	196	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	211	214	first strand
Strand 2	G	222	225	anti-parallel
Strand 3	G	264	267	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	255	258	first strand
Strand 2	G	243	248	anti-parallel
Strand 3	G	276	281	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	44	first strand
Strand 2	E	56	61	anti-parallel
Strand 3	E	95	100	anti-parallel
Strand 4	E	88	92	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	51	first strand
Strand 2	E	123	132	parallel
Strand 3	E	112	117	anti-parallel
Strand 4	E	75	78	anti-parallel
Strand 5	E	81	82	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	186	187	first strand
Strand 2	E	194	197	anti-parallel
Strand 3	E	151	156	anti-parallel
Strand 4	E	139	146	anti-parallel
Strand 5	E	233	234	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	182	183	first strand
Strand 2	E	168	175	anti-parallel
Strand 3	E	207	214	anti-parallel
Strand 4	E	219	221	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	182	183	first strand
Strand 2	E	168	175	anti-parallel
Strand 3	E	207	214	anti-parallel
Strand 4	E	225	227	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	242	244	first strand
Strand 2	E	254	256	anti-parallel
Strand 3	E	295	296	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	284	286	first strand
Strand 2	E	270	278	anti-parallel
Strand 3	E	306	315	anti-parallel
Strand 4	E	334	337	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D7H

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D7H