Analysis of interatomic Contacts of Structural Units in PDB entry:
8D7I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D7I entry

There are 7 chains in PDB entry 8D7I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 29	GLN 246
B	SER 47	ASP 145
C	ILE 16	ARG 238
D	ILE 29	GLN 246
E	SER 47	ASP 145
F	ILE 16	ARG 238
G	ILE 29	ASP 242

There are 44 helices in PDB entry 8D7I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	71	Right-handed 310
Helix 2	AA2	A	237	246	Right-handed alpha
Helix 3	AA3	B	78	94	Right-handed alpha
Helix 4	AA4	B	96	103	Right-handed alpha
Helix 5	AA5	C	57	61	Right-handed 310
Helix 6	AA6	C	163	171	Right-handed alpha
Helix 7	AA7	C	229	237	Right-handed alpha
Helix 8	AA8	D	67	72	Right-handed alpha
Helix 9	AA9	D	237	246	Right-handed alpha
Helix 10	AB1	E	77	94	Right-handed alpha
Helix 11	AB2	E	96	102	Right-handed alpha
Helix 12	AB3	F	57	61	Right-handed 310
Helix 13	AB4	F	163	171	Right-handed alpha
Helix 14	AB5	F	229	237	Right-handed alpha
Helix 15	AB6	G	67	73	Right-handed alpha
Helix 16	AB7	G	75	77	Right-handed 310
Helix 17	AB8	G	237	246	Right-handed alpha
Helix 18	AB9	H	77	94	Right-handed alpha
Helix 19	AC1	H	96	103	Right-handed alpha
Helix 20	AC2	I	57	61	Right-handed 310
Helix 21	AC3	I	163	171	Right-handed alpha
Helix 22	AC4	I	229	237	Right-handed alpha
Helix 23	AC5	J	67	72	Right-handed alpha
Helix 24	AC6	J	237	246	Right-handed alpha
Helix 25	AC7	K	77	94	Right-handed alpha
Helix 26	AC8	K	96	103	Right-handed alpha
Helix 27	AC9	L	57	61	Right-handed 310
Helix 28	AD1	L	163	171	Right-handed alpha
Helix 29	AD2	L	229	237	Right-handed alpha
Helix 30	AD3	M	67	72	Right-handed alpha
Helix 31	AD4	M	75	77	Right-handed 310
Helix 32	AD5	M	237	246	Right-handed alpha
Helix 33	AD6	N	78	94	Right-handed alpha
Helix 34	AD7	N	96	103	Right-handed alpha
Helix 35	AD8	O	57	61	Right-handed 310
Helix 36	AD9	O	163	171	Right-handed alpha
Helix 37	AE1	O	229	237	Right-handed alpha
Helix 38	AE2	P	67	71	Right-handed 310
Helix 39	AE3	P	237	246	Right-handed alpha
Helix 40	AE4	Q	77	94	Right-handed alpha
Helix 41	AE5	Q	96	103	Right-handed alpha
Helix 42	AE6	R	57	61	Right-handed 310
Helix 43	AE7	R	163	171	Right-handed alpha
Helix 44	AE8	R	229	237	Right-handed alpha

There are 37 sheets in PDB entry 8D7I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	169	176	anti-parallel
Strand 3	A	149	154	anti-parallel
Strand 4	A	204	207	anti-parallel
Strand 5	A	210	219	anti-parallel
Strand 6	B	126	128	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	169	176	anti-parallel
Strand 3	A	185	188	anti-parallel
Strand 4	A	229	233	anti-parallel
Strand 5	A	210	219	anti-parallel
Strand 6	B	126	128	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	48	first strand
Strand 2	A	51	60	anti-parallel
Strand 3	A	63	66	anti-parallel
Strand 4	A	118	122	anti-parallel
Strand 5	A	96	105	anti-parallel
Strand 6	A	80	83	anti-parallel
Strand 7	A	43	48	anti-parallel

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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	121	first strand
Strand 2	B	106	112	anti-parallel
Strand 3	B	137	144	anti-parallel
Strand 4	B	48	57	parallel
Strand 5	B	60	62	anti-parallel
Strand 6	C	206	213	anti-parallel
Strand 7	B	65	71	first strand
Strand 8	C	40	44	anti-parallel
Strand 9	C	31	37	anti-parallel
Strand 10	C	64	69	anti-parallel
Strand 11	C	82	91	anti-parallel
Strand 12	C	105	109	anti-parallel
Strand 13	C	53	56	anti-parallel
Strand 14	C	47	50	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	155	160	anti-parallel
Strand 3	C	136	141	anti-parallel
Strand 4	C	199	201	anti-parallel
Strand 5	C	206	213	anti-parallel
Strand 6	B	60	62	anti-parallel
Strand 7	B	48	57	anti-parallel
Strand 8	C	221	225	first strand
Strand 9	C	179	182	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	77	first strand
Strand 2	B	131	133	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	34	first strand
Strand 2	D	169	176	anti-parallel
Strand 3	D	149	154	anti-parallel
Strand 4	D	204	207	anti-parallel
Strand 5	D	210	219	anti-parallel
Strand 6	E	126	128	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	34	first strand
Strand 2	D	169	176	anti-parallel
Strand 3	D	185	187	anti-parallel
Strand 4	D	229	233	anti-parallel
Strand 5	D	210	219	anti-parallel
Strand 6	E	126	128	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	48	first strand
Strand 2	D	51	60	anti-parallel
Strand 3	D	63	66	anti-parallel
Strand 4	D	118	122	anti-parallel
Strand 5	D	96	105	anti-parallel
Strand 6	D	79	83	anti-parallel
Strand 7	D	43	48	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	121	first strand
Strand 2	E	106	112	anti-parallel
Strand 3	E	137	144	anti-parallel
Strand 4	E	48	56	parallel
Strand 5	E	65	71	anti-parallel
Strand 6	F	40	44	anti-parallel
Strand 7	F	31	37	anti-parallel
Strand 8	F	64	69	anti-parallel
Strand 9	F	82	84	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	76	first strand
Strand 2	E	132	133	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	21	first strand
Strand 2	F	155	160	anti-parallel
Strand 3	F	136	141	anti-parallel
Strand 4	F	199	201	anti-parallel
Strand 5	F	206	213	anti-parallel
Strand 6	F	221	225	anti-parallel
Strand 7	F	179	182	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	50	first strand
Strand 2	F	53	56	anti-parallel
Strand 3	F	105	109	anti-parallel
Strand 4	F	86	91	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	34	first strand
Strand 2	G	169	176	anti-parallel
Strand 3	G	149	154	anti-parallel
Strand 4	G	204	207	anti-parallel
Strand 5	G	210	219	anti-parallel
Strand 6	H	126	128	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	34	first strand
Strand 2	G	169	176	anti-parallel
Strand 3	G	185	187	anti-parallel
Strand 4	G	229	233	anti-parallel
Strand 5	G	210	219	anti-parallel
Strand 6	H	126	128	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	48	first strand
Strand 2	G	51	60	anti-parallel
Strand 3	G	63	66	anti-parallel
Strand 4	G	118	122	anti-parallel
Strand 5	G	96	105	anti-parallel
Strand 6	G	79	83	anti-parallel
Strand 7	G	43	48	anti-parallel

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There are 14 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	117	121	first strand
Strand 2	H	105	112	anti-parallel
Strand 3	H	137	145	anti-parallel
Strand 4	H	48	57	parallel
Strand 5	H	60	62	anti-parallel
Strand 6	I	206	213	anti-parallel
Strand 7	H	65	71	first strand
Strand 8	I	40	44	anti-parallel
Strand 9	I	31	37	anti-parallel
Strand 10	I	64	69	anti-parallel
Strand 11	I	82	91	anti-parallel
Strand 12	I	105	109	anti-parallel
Strand 13	I	53	56	anti-parallel
Strand 14	I	47	50	anti-parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	20	21	first strand
Strand 2	I	155	160	anti-parallel
Strand 3	I	136	141	anti-parallel
Strand 4	I	199	201	anti-parallel
Strand 5	I	206	213	anti-parallel
Strand 6	H	60	62	anti-parallel
Strand 7	H	48	57	anti-parallel
Strand 8	I	221	225	first strand
Strand 9	I	179	182	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	75	76	first strand
Strand 2	H	132	133	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	33	34	first strand
Strand 2	J	169	176	anti-parallel
Strand 3	J	149	154	anti-parallel
Strand 4	J	204	207	anti-parallel
Strand 5	J	210	219	anti-parallel
Strand 6	K	126	128	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	33	34	first strand
Strand 2	J	169	176	anti-parallel
Strand 3	J	185	188	anti-parallel
Strand 4	J	229	233	anti-parallel
Strand 5	J	210	219	anti-parallel
Strand 6	K	126	128	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	43	48	first strand
Strand 2	J	51	60	anti-parallel
Strand 3	J	63	66	anti-parallel
Strand 4	J	118	122	anti-parallel
Strand 5	J	96	104	anti-parallel
Strand 6	J	79	83	anti-parallel
Strand 7	J	43	48	anti-parallel

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There are 12 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	117	121	first strand
Strand 2	K	106	112	anti-parallel
Strand 3	K	137	144	anti-parallel
Strand 4	K	48	56	parallel
Strand 5	K	65	71	anti-parallel
Strand 6	L	40	44	anti-parallel
Strand 7	L	31	37	anti-parallel
Strand 8	L	65	69	anti-parallel
Strand 9	L	82	91	anti-parallel
Strand 10	L	105	109	anti-parallel
Strand 11	L	53	56	anti-parallel
Strand 12	L	47	50	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	75	76	first strand
Strand 2	K	132	133	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	20	21	first strand
Strand 2	L	155	160	anti-parallel
Strand 3	L	136	141	anti-parallel
Strand 4	L	199	201	anti-parallel
Strand 5	L	206	212	anti-parallel
Strand 6	L	221	225	anti-parallel
Strand 7	L	179	182	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	33	34	first strand
Strand 2	M	169	176	anti-parallel
Strand 3	M	149	154	anti-parallel
Strand 4	M	204	207	anti-parallel
Strand 5	M	210	219	anti-parallel
Strand 6	N	126	128	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	33	34	first strand
Strand 2	M	169	176	anti-parallel
Strand 3	M	185	188	anti-parallel
Strand 4	M	229	233	anti-parallel
Strand 5	M	210	219	anti-parallel
Strand 6	N	126	128	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	43	48	first strand
Strand 2	M	51	60	anti-parallel
Strand 3	M	63	66	anti-parallel
Strand 4	M	118	122	anti-parallel
Strand 5	M	96	105	anti-parallel
Strand 6	M	79	83	anti-parallel
Strand 7	M	43	48	anti-parallel

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There are 12 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	117	121	first strand
Strand 2	N	106	112	anti-parallel
Strand 3	N	137	144	anti-parallel
Strand 4	N	48	56	parallel
Strand 5	N	66	71	anti-parallel
Strand 6	O	40	50	anti-parallel
Strand 7	O	53	56	anti-parallel
Strand 8	O	105	109	anti-parallel
Strand 9	O	82	91	anti-parallel
Strand 10	O	64	69	anti-parallel
Strand 11	O	30	37	anti-parallel
Strand 12	O	40	50	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	75	77	first strand
Strand 2	N	131	133	anti-parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	20	21	first strand
Strand 2	O	155	160	anti-parallel
Strand 3	O	136	141	anti-parallel
Strand 4	O	199	201	anti-parallel
Strand 5	O	206	212	anti-parallel
Strand 6	O	221	225	anti-parallel
Strand 7	O	179	182	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	33	34	first strand
Strand 2	P	169	176	anti-parallel
Strand 3	P	149	154	anti-parallel
Strand 4	P	204	207	anti-parallel
Strand 5	P	210	219	anti-parallel
Strand 6	Q	126	128	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	33	34	first strand
Strand 2	P	169	176	anti-parallel
Strand 3	P	185	188	anti-parallel
Strand 4	P	229	233	anti-parallel
Strand 5	P	210	219	anti-parallel
Strand 6	Q	126	128	anti-parallel

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There are 7 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	96	98	first strand
Strand 2	P	79	83	anti-parallel
Strand 3	P	43	48	anti-parallel
Strand 4	P	51	58	anti-parallel
Strand 5	P	63	66	anti-parallel
Strand 6	P	118	122	anti-parallel
Strand 7	P	100	105	anti-parallel

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There are 12 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	117	121	first strand
Strand 2	Q	106	112	anti-parallel
Strand 3	Q	137	144	anti-parallel
Strand 4	Q	48	56	parallel
Strand 5	Q	66	71	anti-parallel
Strand 6	R	40	44	anti-parallel
Strand 7	R	31	37	anti-parallel
Strand 8	R	64	69	anti-parallel
Strand 9	R	82	91	anti-parallel
Strand 10	R	105	109	anti-parallel
Strand 11	R	53	56	anti-parallel
Strand 12	R	47	48	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	75	76	first strand
Strand 2	Q	132	133	anti-parallel

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There are 7 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	20	21	first strand
Strand 2	R	155	160	anti-parallel
Strand 3	R	136	141	anti-parallel
Strand 4	R	199	201	anti-parallel
Strand 5	R	206	212	anti-parallel
Strand 6	R	221	225	anti-parallel
Strand 7	R	179	182	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D7I

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D7I