Analysis of interatomic Contacts of Structural Units in PDB entry:
8D7P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D7P entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 8D7P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2TRP 290
B
 GLU 2TRP 290
D
 GLU 586ASP 588
D
 VAL 590ALA 596
C
 ASP 588ASP 588
C
 VAL 590GLU 594
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 8D7P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 59Right-handed alpha
Helix 2
AA2
A
88 96Right-handed alpha
Helix 3
AA3
A
101 122Right-handed alpha
Helix 4
AA4
A
130 132Right-handed 310
Helix 5
AA5
A
138 142Right-handed 310
Helix 6
AA6
A
181 186Right-handed alpha
Helix 7
AA7
A
191 209Right-handed alpha
Helix 8
AA8
A
221 234Right-handed alpha
Helix 9
AA9
A
236 241Right-handed alpha
Helix 10
AB1
A
246 258Right-handed alpha
Helix 11
AB2
A
265 280Right-handed alpha
Helix 12
AB3
B
48 59Right-handed alpha
Helix 13
AB4
B
88 96Right-handed alpha
Helix 14
AB5
B
101 122Right-handed alpha
Helix 15
AB6
B
130 132Right-handed 310
Helix 16
AB7
B
138 142Right-handed 310
Helix 17
AB8
B
181 186Right-handed alpha
Helix 18
AB9
B
191 209Right-handed alpha
Helix 19
AC1
B
221 234Right-handed alpha
Helix 20
AC2
B
236 241Right-handed alpha
Helix 21
AC3
B
245 258Right-handed alpha
Helix 22
AC4
B
265 280Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 8D7P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
9 18anti-parallel
Strand 3
A
21 28anti-parallel
Strand 4
A
34 41anti-parallel
Strand 5
A
77 83anti-parallel
Strand 6
A
68 74anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
154 155anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
145 147anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
C
592 593anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
9 18anti-parallel
Strand 3
B
21 28anti-parallel
Strand 4
B
34 41anti-parallel
Strand 5
B
77 83anti-parallel
Strand 6
B
68 74anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 125first strand
Strand 2
B
154 155anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 136first strand
Strand 2
B
145 147anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 175first strand
Strand 2
D
593 594anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il