Analysis of interatomic Contacts of Structural Units in PDB entry:
8D7Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D7Z entry

There are 3 chains in PDB entry 8D7Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 1140
B	ASN 45	THR 425
C	PRO 144	PRO 144

There are 20 helices in PDB entry 8D7Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	250	254	Right-handed 310
Helix 2	AA2	A	381	384	Right-handed 310
Helix 3	AA3	A	985	990	Right-handed alpha
Helix 4	AA4	A	1044	1060	Right-handed alpha
Helix 5	AA5	A	1069	1075	Right-handed alpha
Helix 6	AA6	A	1091	1096	Right-handed alpha
Helix 7	AA7	A	1101	1109	Right-handed alpha
Helix 8	AA8	A	1126	1138	Right-handed alpha
Helix 9	AA9	B	52	57	Right-handed alpha
Helix 10	AB1	B	103	115	Right-handed alpha
Helix 11	AB2	B	200	204	Right-handed 310
Helix 12	AB3	B	222	232	Right-handed alpha
Helix 13	AB4	B	233	237	Right-handed 310
Helix 14	AB5	B	241	247	Right-handed alpha
Helix 15	AB6	B	249	265	Right-handed alpha
Helix 16	AB7	B	276	288	Right-handed alpha
Helix 17	AB8	B	291	301	Right-handed alpha
Helix 18	AB9	B	303	318	Right-handed alpha
Helix 19	AC1	B	333	337	Right-handed 310
Helix 20	AC2	C	157	168	Right-handed alpha

There are 29 sheets in PDB entry 8D7Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1004	1009	first strand
Strand 2	A	1025	1032	anti-parallel
Strand 3	A	1037	1042	anti-parallel
Strand 4	A	4	10	anti-parallel
Strand 5	A	1088	1090	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	21	first strand
Strand 2	A	30	34	anti-parallel
Strand 3	A	38	44	anti-parallel
Strand 4	A	49	56	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	67	first strand
Strand 2	A	76	81	anti-parallel
Strand 3	A	85	94	anti-parallel
Strand 4	A	97	107	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	124	first strand
Strand 2	A	130	134	anti-parallel
Strand 3	A	139	144	anti-parallel
Strand 4	A	155	158	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	166	first strand
Strand 2	A	177	184	anti-parallel
Strand 3	A	187	194	anti-parallel
Strand 4	A	210	211	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	221	first strand
Strand 2	A	229	232	anti-parallel
Strand 3	A	237	240	anti-parallel
Strand 4	A	245	248	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	263	first strand
Strand 2	A	270	275	anti-parallel
Strand 3	A	279	284	anti-parallel
Strand 4	A	302	307	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	290	first strand
Strand 2	A	295	296	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	316	first strand
Strand 2	A	321	326	anti-parallel
Strand 3	A	331	336	anti-parallel
Strand 4	A	347	353	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	365	first strand
Strand 2	A	374	379	anti-parallel
Strand 3	A	386	392	anti-parallel
Strand 4	A	710	716	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	402	first strand
Strand 2	A	699	704	anti-parallel
Strand 3	A	690	694	anti-parallel
Strand 4	A	678	682	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	413	first strand
Strand 2	A	424	428	anti-parallel
Strand 3	A	433	437	anti-parallel
Strand 4	A	444	445	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	463	first strand
Strand 2	A	467	471	anti-parallel
Strand 3	A	476	480	anti-parallel
Strand 4	A	489	490	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	503	first strand
Strand 2	A	507	512	anti-parallel
Strand 3	A	515	520	anti-parallel
Strand 4	A	528	533	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	542	first strand
Strand 2	A	557	560	anti-parallel
Strand 3	A	566	569	anti-parallel
Strand 4	A	576	580	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	595	first strand
Strand 2	A	600	606	anti-parallel
Strand 3	A	611	613	anti-parallel
Strand 4	A	627	629	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	637	639	first strand
Strand 2	A	649	652	anti-parallel
Strand 3	A	657	661	anti-parallel
Strand 4	A	666	668	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	720	727	first strand
Strand 2	A	732	743	anti-parallel
Strand 3	A	749	751	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	720	727	first strand
Strand 2	A	732	743	anti-parallel
Strand 3	A	785	795	anti-parallel
Strand 4	A	801	806	anti-parallel
Strand 5	A	764	765	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	811	819	first strand
Strand 2	A	828	835	anti-parallel
Strand 3	A	846	854	anti-parallel
Strand 4	A	857	866	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	874	876	first strand
Strand 2	A	879	884	anti-parallel
Strand 3	A	887	893	anti-parallel
Strand 4	A	899	903	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	913	914	first strand
Strand 2	A	920	924	anti-parallel
Strand 3	A	929	935	anti-parallel
Strand 4	A	942	949	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	954	961	first strand
Strand 2	A	964	969	anti-parallel
Strand 3	A	973	978	anti-parallel
Strand 4	A	993	999	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1076	1077	first strand
Strand 2	A	1082	1083	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	66	first strand
Strand 2	B	136	145	anti-parallel
Strand 3	B	156	171	anti-parallel
Strand 4	B	96	100	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	83	first strand
Strand 2	B	178	184	anti-parallel
Strand 3	B	156	171	anti-parallel
Strand 4	B	136	145	anti-parallel
Strand 5	B	119	123	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	423	424	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	350	first strand
Strand 2	B	356	362	anti-parallel
Strand 3	B	415	416	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	375	first strand
Strand 2	B	384	391	anti-parallel
Strand 3	B	397	404	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D7Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D7Z