Analysis of interatomic Contacts of Structural Units in PDB entry:
8D82

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D82 entry

There are 6 chains in PDB entry 8D82 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ARG 23	SER 318
D	ARG 44	MET 212
A	LEU 24	LYS 612
G	ARG 23	SER 318
H	ARG 44	MET 212
E	LEU 24	LYS 612

There are 22 helices in PDB entry 8D82. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	87	91	Right-handed 310
Helix 2	AA2	D	48	75	Right-handed alpha
Helix 3	AA3	D	96	100	Right-handed 310
Helix 4	AA4	D	108	130	Right-handed alpha
Helix 5	AA5	D	137	156	Right-handed alpha
Helix 6	AA6	D	170	179	Right-handed alpha
Helix 7	AA7	D	183	211	Right-handed alpha
Helix 8	AA8	A	51	59	Right-handed alpha
Helix 9	AA9	A	247	252	Right-handed 310
Helix 10	AB1	A	273	278	Right-handed 310
Helix 11	AB2	A	543	548	Right-handed alpha
Helix 12	AB3	G	87	91	Right-handed 310
Helix 13	AB4	H	48	75	Right-handed alpha
Helix 14	AB5	H	96	100	Right-handed 310
Helix 15	AB6	H	108	130	Right-handed alpha
Helix 16	AB7	H	137	156	Right-handed alpha
Helix 17	AB8	H	170	179	Right-handed alpha
Helix 18	AB9	H	183	211	Right-handed alpha
Helix 19	AC1	E	51	59	Right-handed alpha
Helix 20	AC2	E	247	252	Right-handed 310
Helix 21	AC3	E	273	278	Right-handed 310
Helix 22	AC4	E	543	548	Right-handed alpha

There are 46 sheets in PDB entry 8D82. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	37	first strand
Strand 2	C	105	110	parallel
Strand 3	C	92	97	anti-parallel
Strand 4	C	57	63	anti-parallel
Strand 5	C	73	77	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	C	82	83	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	122	first strand
Strand 2	C	130	134	anti-parallel
Strand 3	C	174	178	anti-parallel
Strand 4	C	166	167	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	163	first strand
Strand 2	C	145	153	anti-parallel
Strand 3	C	187	195	anti-parallel
Strand 4	C	200	202	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	163	first strand
Strand 2	C	145	153	anti-parallel
Strand 3	C	187	195	anti-parallel
Strand 4	C	206	209	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	226	first strand
Strand 2	C	234	239	anti-parallel
Strand 3	C	276	279	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	269	first strand
Strand 2	C	251	259	anti-parallel
Strand 3	C	288	296	anti-parallel
Strand 4	C	310	312	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	88	first strand
Strand 2	E	26	27	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	27	first strand
Strand 2	H	86	88	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	44	50	anti-parallel
Strand 3	A	86	91	anti-parallel
Strand 4	A	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	68	first strand
Strand 2	A	98	105	anti-parallel
Strand 3	A	113	121	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	147	first strand
Strand 2	A	130	137	anti-parallel
Strand 3	A	220	221	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	173	first strand
Strand 2	A	157	163	anti-parallel
Strand 3	A	194	201	anti-parallel
Strand 4	A	206	208	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	173	first strand
Strand 2	A	157	163	anti-parallel
Strand 3	A	194	201	anti-parallel
Strand 4	A	212	214	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	231	first strand
Strand 2	A	240	245	anti-parallel
Strand 3	A	283	286	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	257	first strand
Strand 2	A	301	303	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	271	first strand
Strand 2	A	260	262	anti-parallel
Strand 3	A	294	298	anti-parallel
Strand 4	A	317	320	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	335	first strand
Strand 2	A	345	351	anti-parallel
Strand 3	A	386	391	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	382	first strand
Strand 2	A	365	372	anti-parallel
Strand 3	A	396	403	anti-parallel
Strand 4	A	412	416	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	432	first strand
Strand 2	A	440	443	anti-parallel
Strand 3	A	479	481	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	474	first strand
Strand 2	A	452	459	anti-parallel
Strand 3	A	492	500	anti-parallel
Strand 4	A	503	504	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	474	first strand
Strand 2	A	452	459	anti-parallel
Strand 3	A	492	500	anti-parallel
Strand 4	A	508	512	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	566	571	first strand
Strand 2	A	553	559	anti-parallel
Strand 3	A	587	595	anti-parallel
Strand 4	A	600	602	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	566	571	first strand
Strand 2	A	553	559	anti-parallel
Strand 3	A	587	595	anti-parallel
Strand 4	A	606	609	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	34	37	first strand
Strand 2	G	105	110	parallel
Strand 3	G	92	97	anti-parallel
Strand 4	G	57	63	anti-parallel
Strand 5	G	73	77	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	44	first strand
Strand 2	G	82	83	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	122	first strand
Strand 2	G	130	134	anti-parallel
Strand 3	G	174	178	anti-parallel
Strand 4	G	166	167	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	159	163	first strand
Strand 2	G	145	153	anti-parallel
Strand 3	G	187	195	anti-parallel
Strand 4	G	200	202	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	159	163	first strand
Strand 2	G	145	153	anti-parallel
Strand 3	G	187	195	anti-parallel
Strand 4	G	206	209	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	220	226	first strand
Strand 2	G	234	239	anti-parallel
Strand 3	G	276	279	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	266	269	first strand
Strand 2	G	251	259	anti-parallel
Strand 3	G	288	296	anti-parallel
Strand 4	G	310	312	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	32	first strand
Strand 2	E	44	50	anti-parallel
Strand 3	E	86	91	anti-parallel
Strand 4	E	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	68	first strand
Strand 2	E	98	105	anti-parallel
Strand 3	E	113	121	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	147	first strand
Strand 2	E	130	137	anti-parallel
Strand 3	E	220	221	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	172	173	first strand
Strand 2	E	157	163	anti-parallel
Strand 3	E	194	201	anti-parallel
Strand 4	E	206	208	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	172	173	first strand
Strand 2	E	157	163	anti-parallel
Strand 3	E	194	201	anti-parallel
Strand 4	E	212	214	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	226	231	first strand
Strand 2	E	240	245	anti-parallel
Strand 3	E	283	286	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	255	257	first strand
Strand 2	E	301	303	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	270	271	first strand
Strand 2	E	260	262	anti-parallel
Strand 3	E	294	298	anti-parallel
Strand 4	E	317	320	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	332	335	first strand
Strand 2	E	345	351	anti-parallel
Strand 3	E	386	391	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	376	382	first strand
Strand 2	E	365	372	anti-parallel
Strand 3	E	396	403	anti-parallel
Strand 4	E	412	416	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	430	432	first strand
Strand 2	E	440	443	anti-parallel
Strand 3	E	479	481	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	469	474	first strand
Strand 2	E	452	459	anti-parallel
Strand 3	E	492	500	anti-parallel
Strand 4	E	503	504	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	469	474	first strand
Strand 2	E	452	459	anti-parallel
Strand 3	E	492	500	anti-parallel
Strand 4	E	508	512	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	566	571	first strand
Strand 2	E	553	559	anti-parallel
Strand 3	E	587	595	anti-parallel
Strand 4	E	600	602	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	566	571	first strand
Strand 2	E	553	559	anti-parallel
Strand 3	E	587	595	anti-parallel
Strand 4	E	606	609	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D82

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D82