Analysis of interatomic Contacts of Structural Units in PDB entry:
8D89


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D89 entry

There is 1 chain in PDB entry 8D89 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 23GLU 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8D89. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 41Right-handed alpha
Helix 2
AA2
A
84 89Right-handed alpha
Helix 3
AA3
A
95 109Right-handed alpha
Helix 4
AA4
A
121 124Right-handed 310
Helix 5
AA5
A
125 130Right-handed alpha
Helix 6
AA6
A
131 150Right-handed alpha
Helix 7
AA7
A
162 168Right-handed alpha
Helix 8
AA8
A
171 177Right-handed 310
Helix 9
AA9
A
180 198Right-handed alpha
Helix 10
AB1
A
211 216Right-handed 310
Helix 11
AB2
A
225 244Right-handed alpha
Helix 12
AB3
A
260 268Right-handed alpha
Helix 13
AB4
A
274 285Right-handed alpha
Helix 14
AB5
A
311 327Right-handed alpha
Helix 15
AB6
A
344 358Right-handed alpha
Helix 16
AB7
A
382 400Right-handed alpha
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There are 3 sheets in PDB entry 8D89. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 57first strand
Strand 2
A
60 67anti-parallel
Strand 3
A
70 71anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 78first strand
Strand 2
A
112 116parallel
Strand 3
A
152 158parallel
Strand 4
A
205 209parallel
Strand 5
A
249 251parallel
Strand 6
A
292 297parallel
Strand 7
A
329 335parallel
Strand 8
A
362 365parallel
Strand 9
A
74 78parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 304first strand
Strand 2
A
308 310anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il