Analysis of interatomic Contacts of Structural Units in PDB entry:
8D8J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D8J entry

There are 16 chains in PDB entry 8D8J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
0	GLU 61	LYS 628
5	GLY 41	THR 327
d	ASP 148	LYS 849
O	SER 34	PHE 258
P	THR 2	LEU 120
Q	ALA 2	ILE 183
R	ASP 81	LEU 137
V	GLY 2	VAL 223
2	THR 30	ASN 128
D	PRO 2	LYS 486
E	TYR 139	SER 306
F	MET 1	ILE 131
6	PHE 27	ILE 345
H	MET 1	LYS 155
a	U -63	A 1591
L	ALA 29	LYS 149

There are142 helices in PDB entry 8D8J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	0	65	72	Right-handed alpha
Helix 2	AA2	0	81	92	Right-handed alpha
Helix 3	AA3	0	97	111	Right-handed alpha
Helix 4	AA4	0	124	155	Right-handed alpha
Helix 5	AA5	0	172	183	Right-handed alpha
Helix 6	AA6	0	198	211	Right-handed alpha
Helix 7	AA7	0	284	298	Right-handed alpha
Helix 8	AA8	0	313	329	Right-handed alpha
Helix 9	AA9	0	330	333	Right-handed 310
Helix 10	AB1	0	385	391	Right-handed 310
Helix 11	AB2	0	409	416	Right-handed alpha
Helix 12	AB3	0	464	476	Right-handed alpha
Helix 13	AB4	0	490	494	Right-handed 310
Helix 14	AB5	0	530	538	Right-handed alpha
Helix 15	AB6	0	559	599	Right-handed alpha
Helix 16	AB7	0	605	628	Right-handed alpha
Helix 17	AB8	5	42	57	Right-handed alpha
Helix 18	AB9	5	61	67	Right-handed alpha
Helix 19	AC1	5	70	77	Right-handed alpha
Helix 20	AC2	5	98	104	Right-handed alpha
Helix 21	AC3	5	116	125	Right-handed alpha
Helix 22	AC4	5	130	137	Right-handed alpha
Helix 23	AC5	5	138	152	Right-handed alpha
Helix 24	AC6	5	155	173	Right-handed alpha
Helix 25	AC7	5	175	179	Right-handed 310
Helix 26	AC8	5	183	199	Right-handed alpha
Helix 27	AC9	5	203	218	Right-handed alpha
Helix 28	AD1	5	227	240	Right-handed alpha
Helix 29	AD2	5	263	288	Right-handed alpha
Helix 30	AD3	5	294	308	Right-handed alpha
Helix 31	AD4	5	313	327	Right-handed alpha
Helix 32	AD5	d	149	153	Right-handed alpha
Helix 33	AD6	d	162	172	Right-handed alpha
Helix 34	AD7	d	180	192	Right-handed alpha
Helix 35	AD8	d	196	211	Right-handed alpha
Helix 36	AD9	d	219	233	Right-handed alpha
Helix 37	AE1	d	245	270	Right-handed alpha
Helix 38	AE2	d	283	298	Right-handed alpha
Helix 39	AE3	d	299	315	Right-handed alpha
Helix 40	AE4	d	319	333	Right-handed alpha
Helix 41	AE5	d	335	350	Right-handed alpha
Helix 42	AE6	d	356	371	Right-handed alpha
Helix 43	AE7	d	372	386	Right-handed alpha
Helix 44	AE8	d	391	406	Right-handed alpha
Helix 45	AE9	d	408	413	Right-handed alpha
Helix 46	AF1	d	415	433	Right-handed alpha
Helix 47	AF2	d	440	456	Right-handed alpha
Helix 48	AF3	d	458	480	Right-handed alpha
Helix 49	AF4	d	488	497	Right-handed alpha
Helix 50	AF5	d	498	511	Right-handed alpha
Helix 51	AF6	d	518	523	Right-handed alpha
Helix 52	AF7	d	523	543	Right-handed alpha
Helix 53	AF8	d	564	581	Right-handed alpha
Helix 54	AF9	d	582	585	Right-handed 310
Helix 55	AG1	d	592	614	Right-handed alpha
Helix 56	AG2	d	616	636	Right-handed alpha
Helix 57	AG3	d	642	657	Right-handed alpha
Helix 58	AG4	d	658	669	Right-handed alpha
Helix 59	AG5	d	672	689	Right-handed alpha
Helix 60	AG6	d	719	730	Right-handed alpha
Helix 61	AG7	d	731	733	Right-handed 310
Helix 62	AG8	d	737	752	Right-handed alpha
Helix 63	AG9	d	753	768	Right-handed alpha
Helix 64	AH1	d	770	776	Right-handed alpha
Helix 65	AH2	d	777	799	Right-handed alpha
Helix 66	AH3	d	801	812	Right-handed alpha
Helix 67	AH4	d	819	834	Right-handed alpha
Helix 68	AH5	d	835	848	Right-handed alpha
Helix 69	AH6	O	35	59	Right-handed alpha
Helix 70	AH7	O	73	84	Right-handed alpha
Helix 71	AH8	O	94	111	Right-handed alpha
Helix 72	AH9	O	128	142	Right-handed alpha
Helix 73	AI1	O	148	165	Right-handed alpha
Helix 74	AI2	O	173	195	Right-handed alpha
Helix 75	AI3	O	198	223	Right-handed alpha
Helix 76	AI4	O	223	235	Right-handed alpha
Helix 77	AI5	O	237	243	Right-handed alpha
Helix 78	AI6	O	248	256	Right-handed alpha
Helix 79	AI7	P	51	58	Right-handed alpha
Helix 80	AI8	P	68	79	Right-handed alpha
Helix 81	AI9	P	83	93	Right-handed alpha
Helix 82	AJ1	P	97	101	Right-handed 310
Helix 83	AJ2	Q	80	117	Right-handed alpha
Helix 84	AJ3	Q	124	135	Right-handed alpha
Helix 85	AJ4	Q	171	183	Right-handed alpha
Helix 86	AJ5	R	88	94	Right-handed 310
Helix 87	AJ6	R	95	101	Right-handed alpha
Helix 88	AJ7	R	111	116	Right-handed alpha
Helix 89	AJ8	R	118	136	Right-handed alpha
Helix 90	AJ9	V	3	9	Right-handed 310
Helix 91	AK1	V	29	37	Right-handed alpha
Helix 92	AK2	V	70	78	Right-handed alpha
Helix 93	AK3	V	90	149	Right-handed alpha
Helix 94	AK4	V	155	162	Right-handed alpha
Helix 95	AK5	V	169	206	Right-handed alpha
Helix 96	AK6	V	212	223	Right-handed alpha
Helix 97	AK7	2	40	49	Right-handed alpha
Helix 98	AK8	2	51	54	Right-handed 310
Helix 99	AK9	2	55	60	Right-handed alpha
Helix 100	AL1	2	62	67	Right-handed alpha
Helix 101	AL2	2	70	77	Right-handed alpha
Helix 102	AL3	2	80	96	Right-handed alpha
Helix 103	AL4	2	113	127	Right-handed alpha
Helix 104	AL5	D	21	32	Right-handed alpha
Helix 105	AL6	D	40	56	Right-handed alpha
Helix 106	AL7	D	61	69	Right-handed alpha
Helix 107	AL8	D	92	103	Right-handed 310
Helix 108	AL9	D	104	112	Right-handed alpha
Helix 109	AM1	D	117	127	Right-handed alpha
Helix 110	AM2	D	153	161	Right-handed alpha
Helix 111	AM3	D	167	192	Right-handed alpha
Helix 112	AM4	D	192	205	Right-handed alpha
Helix 113	AM5	D	374	380	Right-handed alpha
Helix 114	AM6	D	387	392	Right-handed alpha
Helix 115	AM7	D	394	402	Right-handed alpha
Helix 116	AM8	D	470	484	Right-handed alpha
Helix 117	AM9	E	140	144	Right-handed alpha
Helix 118	AN1	E	189	204	Right-handed alpha
Helix 119	AN2	E	243	254	Right-handed alpha
Helix 120	AN3	E	267	281	Right-handed alpha
Helix 121	AN4	E	285	293	Right-handed alpha
Helix 122	AN5	E	296	301	Right-handed alpha
Helix 123	AN6	F	18	35	Right-handed alpha
Helix 124	AN7	F	74	88	Right-handed alpha
Helix 125	AN8	F	109	116	Right-handed alpha
Helix 126	AN9	F	119	124	Right-handed alpha
Helix 127	AO1	6	52	63	Right-handed alpha
Helix 128	AO2	6	89	94	Right-handed alpha
Helix 129	AO3	6	122	127	Right-handed alpha
Helix 130	AO4	6	131	135	Right-handed 310
Helix 131	AO5	6	150	163	Right-handed alpha
Helix 132	AO6	6	167	176	Right-handed alpha
Helix 133	AO7	6	178	199	Right-handed alpha
Helix 134	AO8	6	202	214	Right-handed alpha
Helix 135	AO9	H	2	19	Right-handed alpha
Helix 136	AP1	H	29	42	Right-handed alpha
Helix 137	AP2	H	67	69	Right-handed 310
Helix 138	AP3	H	102	111	Right-handed alpha
Helix 139	AP4	H	138	144	Right-handed alpha
Helix 140	AP5	L	30	37	Right-handed alpha
Helix 141	AP6	L	49	53	Right-handed 310
Helix 142	AP7	L	142	146	Right-handed 310

There are 20 sheets in PDB entry 8D8J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Initial residue	Terminal residue	Strand sense
Strand 1	257	260	first strand
Strand 2	190	195	parallel
Strand 3	163	168	parallel
Strand 4	269	275	parallel
Strand 5	300	309	parallel
Strand 6	453	458	anti-parallel
Strand 7	367	369	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	402	407	first strand
Strand 2	0	446	451	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Initial residue	Terminal residue	Strand sense
Strand 1	496	497	first strand
Strand 2	507	513	anti-parallel
Strand 3	502	504	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Initial residue	Terminal residue	Strand sense
Strand 1	496	497	first strand
Strand 2	507	513	anti-parallel
Strand 3	519	525	anti-parallel
Strand 4	551	554	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	670	671	first strand
Strand 2	d	734	735	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	81	82	first strand
Strand 2	P	6	15	parallel
Strand 3	P	18	27	anti-parallel
Strand 4	P	38	43	anti-parallel
Strand 5	P	62	67	anti-parallel
Strand 6	6	306	311	parallel
Strand 7	6	294	296	anti-parallel
Strand 8	P	117	119	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	112	114	first strand
Strand 2	6	299	300	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	5	13	first strand
Strand 2	Q	19	30	anti-parallel
Strand 3	Q	35	46	anti-parallel
Strand 4	Q	70	79	parallel
Strand 5	Q	57	62	anti-parallel
Strand 6	Q	5	13	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	136	first strand
Strand 2	D	130	132	anti-parallel
Strand 3	D	149	152	anti-parallel
Strand 4	D	449	452	anti-parallel
Strand 5	D	441	444	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	145	157	first strand
Strand 2	E	162	173	anti-parallel
Strand 3	E	178	186	anti-parallel
Strand 4	E	206	207	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	220	224	first strand
Strand 2	E	227	232	anti-parallel
Strand 3	E	258	264	anti-parallel
Strand 4	E	240	241	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	43	first strand
Strand 2	F	60	72	anti-parallel
Strand 3	F	2	10	anti-parallel
Strand 4	F	91	93	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	55	first strand
Strand 2	F	60	72	anti-parallel
Strand 3	F	2	10	anti-parallel
Strand 4	F	96	99	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	98	99	first strand
Strand 2	6	106	107	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	335	336	first strand
Strand 2	6	342	343	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	27	first strand
Strand 2	H	71	77	anti-parallel
Strand 3	H	45	52	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	79	80	first strand
Strand 2	H	83	84	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	89	91	first strand
Strand 2	H	148	154	anti-parallel
Strand 3	H	100	101	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	89	91	first strand
Strand 2	H	148	154	anti-parallel
Strand 3	H	126	131	anti-parallel
Strand 4	H	134	137	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	57	68	first strand
Strand 2	L	78	85	anti-parallel
Strand 3	L	90	94	anti-parallel
Strand 4	L	123	125	parallel
Strand 5	L	107	112	anti-parallel
Strand 6	L	57	68	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D8J

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D8J