Analysis of interatomic Contacts of Structural Units in PDB entry:
8D8O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D8O entry

There are 2 chains in PDB entry 8D8O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 102	GLU 1263
B	PRO 12	GLU 1201

There are 24 helices in PDB entry 8D8O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	922	927	Right-handed alpha
Helix 2	AA2	A	927	932	Right-handed alpha
Helix 3	AA3	A	997	1001	Right-handed 310
Helix 4	AA4	B	150	154	Right-handed 310
Helix 5	AA5	B	184	193	Right-handed alpha
Helix 6	AA6	B	212	215	Right-handed 310
Helix 7	AA7	B	250	253	Right-handed 310
Helix 8	AA8	B	254	264	Right-handed alpha
Helix 9	AA9	B	291	307	Right-handed alpha
Helix 10	AB1	B	308	310	Right-handed 310
Helix 11	AB2	B	322	328	Right-handed alpha
Helix 12	AB3	B	418	426	Right-handed alpha
Helix 13	AB4	B	454	459	Right-handed 310
Helix 14	AB5	B	467	471	Right-handed 310
Helix 15	AB6	B	477	488	Right-handed alpha
Helix 16	AB7	B	494	499	Right-handed alpha
Helix 17	AB8	B	571	582	Right-handed alpha
Helix 18	AB9	B	659	664	Right-handed 310
Helix 19	AC1	B	795	801	Right-handed 310
Helix 20	AC2	B	873	877	Right-handed 310
Helix 21	AC3	B	927	932	Right-handed alpha
Helix 22	AC4	B	981	986	Right-handed alpha
Helix 23	AC5	B	1058	1061	Right-handed 310
Helix 24	AC6	B	1105	1111	Right-handed alpha

There are 26 sheets in PDB entry 8D8O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	123	first strand
Strand 2	A	128	132	anti-parallel
Strand 3	A	135	140	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	902	904	first strand
Strand 2	A	909	911	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	939	943	first strand
Strand 2	A	1093	1101	anti-parallel
Strand 3	A	1018	1023	anti-parallel
Strand 4	A	1064	1067	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	946	949	first strand
Strand 2	A	1004	1009	anti-parallel
Strand 3	A	1081	1086	anti-parallel
Strand 4	A	1038	1043	anti-parallel
Strand 5	A	1049	1055	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1069	1071	first strand
Strand 2	B	1069	1071	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1117	1118	first strand
Strand 2	A	1125	1126	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1143	1147	first strand
Strand 2	A	1157	1162	anti-parallel
Strand 3	A	1184	1190	anti-parallel
Strand 4	A	1193	1194	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1166	1172	first strand
Strand 2	A	1196	1202	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1216	1217	first strand
Strand 2	A	1233	1234	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1230	1231	first strand
Strand 2	A	1246	1247	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1239	1240	first strand
Strand 2	A	1262	1263	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	140	first strand
Strand 2	B	128	132	anti-parallel
Strand 3	B	116	123	anti-parallel
Strand 4	B	39	47	anti-parallel
Strand 5	B	170	179	anti-parallel
Strand 6	B	204	208	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	140	first strand
Strand 2	B	128	132	anti-parallel
Strand 3	B	116	123	anti-parallel
Strand 4	B	39	47	anti-parallel
Strand 5	B	170	179	anti-parallel
Strand 6	B	15	20	anti-parallel
Strand 7	B	227	230	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	87	95	anti-parallel
Strand 3	B	72	80	anti-parallel
Strand 4	B	55	62	anti-parallel
Strand 5	B	156	160	anti-parallel
Strand 6	B	26	28	anti-parallel
Strand 7	B	217	219	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	315	first strand
Strand 2	B	274	281	parallel
Strand 3	B	318	321	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	315	first strand
Strand 2	B	274	281	parallel
Strand 3	B	434	437	parallel
Strand 4	B	464	466	parallel
Strand 5	B	448	449	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	331	first strand
Strand 2	B	415	417	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	600	604	first strand
Strand 2	B	609	612	anti-parallel
Strand 3	B	827	830	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	640	641	first strand
Strand 2	B	789	791	anti-parallel
Strand 3	B	713	718	anti-parallel
Strand 4	B	759	762	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	645	647	first strand
Strand 2	B	701	711	anti-parallel
Strand 3	B	770	777	anti-parallel
Strand 4	B	736	740	anti-parallel
Strand 5	B	745	747	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	805	810	first strand
Strand 2	B	838	846	anti-parallel
Strand 3	B	858	861	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	902	904	first strand
Strand 2	B	909	911	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	939	943	first strand
Strand 2	B	1093	1101	anti-parallel
Strand 3	B	1018	1023	anti-parallel
Strand 4	B	1063	1067	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	946	949	first strand
Strand 2	B	1004	1014	anti-parallel
Strand 3	B	1079	1086	anti-parallel
Strand 4	B	1037	1044	anti-parallel
Strand 5	B	1049	1056	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1143	1147	first strand
Strand 2	B	1157	1162	anti-parallel
Strand 3	B	1187	1190	anti-parallel
Strand 4	B	1193	1194	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1167	1170	first strand
Strand 2	B	1198	1201	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D8O

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D8O