Analysis of interatomic Contacts of Structural Units in PDB entry:
8D8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D8P entry

There are 2 chains in PDB entry 8D8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 10SER 429
B
 LEU 10SER 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 8D8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 21Right-handed alpha
Helix 2
AA2
A
23 31Right-handed alpha
Helix 3
AA3
A
56 64Right-handed alpha
Helix 4
AA4
A
76 85Right-handed alpha
Helix 5
AA5
A
88 92Right-handed 310
Helix 6
AA6
A
93 109Right-handed alpha
Helix 7
AA7
A
110 135Right-handed alpha
Helix 8
AA8
A
139 156Right-handed alpha
Helix 9
AA9
A
160 178Right-handed alpha
Helix 10
AB1
A
183 207Right-handed alpha
Helix 11
AB2
A
216 223Right-handed alpha
Helix 12
AB3
A
233 243Right-handed alpha
Helix 13
AB4
A
245 250Right-handed alpha
Helix 14
AB5
A
250 265Right-handed alpha
Helix 15
AB6
A
265 279Right-handed alpha
Helix 16
AB7
A
286 300Right-handed alpha
Helix 17
AB8
A
331 336Right-handed alpha
Helix 18
AB9
A
350 355Right-handed alpha
Helix 19
AC1
A
357 361Right-handed 310
Helix 20
AC2
A
380 396Right-handed alpha
Helix 21
AC3
A
405 410Right-handed alpha
Helix 22
AC4
B
13 21Right-handed alpha
Helix 23
AC5
B
23 31Right-handed alpha
Helix 24
AC6
B
56 64Right-handed alpha
Helix 25
AC7
B
76 85Right-handed alpha
Helix 26
AC8
B
88 92Right-handed 310
Helix 27
AC9
B
93 109Right-handed alpha
Helix 28
AD1
B
110 132Right-handed alpha
Helix 29
AD2
B
139 156Right-handed alpha
Helix 30
AD3
B
160 178Right-handed alpha
Helix 31
AD4
B
183 207Right-handed alpha
Helix 32
AD5
B
216 223Right-handed alpha
Helix 33
AD6
B
233 243Right-handed alpha
Helix 34
AD7
B
245 250Right-handed alpha
Helix 35
AD8
B
250 265Right-handed alpha
Helix 36
AD9
B
265 278Right-handed alpha
Helix 37
AE1
B
286 300Right-handed alpha
Helix 38
AE2
B
331 336Right-handed alpha
Helix 39
AE3
B
350 355Right-handed alpha
Helix 40
AE4
B
357 361Right-handed 310
Helix 41
AE5
B
380 396Right-handed alpha
Helix 42
AE6
B
405 410Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8D8P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
50 54anti-parallel
Strand 3
A
326 330parallel
Strand 4
A
305 310anti-parallel
Strand 5
A
69 70anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
425 428anti-parallel
Strand 3
A
400 402anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 316first strand
Strand 2
A
319 321anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 45first strand
Strand 2
B
50 54anti-parallel
Strand 3
B
326 330parallel
Strand 4
B
305 310anti-parallel
Strand 5
B
69 70anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 138first strand
Strand 2
B
425 428anti-parallel
Strand 3
B
400 402anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 316first strand
Strand 2
B
319 321anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il