Analysis of interatomic Contacts of Structural Units in PDB entry:
8D8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D8S entry

There are 2 chains in PDB entry 8D8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 18HIS 249
A
 MET 251SER 431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8D8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 28Right-handed alpha
Helix 2
AA2
A
28 34Right-handed alpha
Helix 3
AA3
A
35 40Right-handed 310
Helix 4
AA4
A
60 74Right-handed alpha
Helix 5
AA5
A
83 104Right-handed alpha
Helix 6
AA6
A
108 110Right-handed 310
Helix 7
AA7
A
117 134Right-handed alpha
Helix 8
AA8
A
147 150Right-handed 310
Helix 9
AA9
A
151 162Right-handed alpha
Helix 10
AB1
A
177 185Right-handed alpha
Helix 11
AB2
A
206 217Right-handed alpha
Helix 12
AB3
A
235 240Right-handed alpha
Helix 13
AB4
A
249 251Right-handed 310
Helix 14
AB5
A
263 270Right-handed alpha
Helix 15
AB6
A
294 298Right-handed 310
Helix 16
AB7
A
303 321Right-handed alpha
Helix 17
AB8
A
321 342Right-handed alpha
Helix 18
AB9
A
368 379Right-handed alpha
Helix 19
AC1
A
390 397Right-handed alpha
Helix 20
AC2
A
412 431Right-handed alpha
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There are 5 sheets in PDB entry 8D8S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 43first strand
Strand 2
A
46 47anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
381 382parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
258 262anti-parallel
Strand 3
A
243 247anti-parallel
Strand 4
A
220 224parallel
Strand 5
A
189 195parallel
Strand 6
A
139 142parallel
Strand 7
A
164 167parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 283first strand
Strand 2
A
288 290anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 348first strand
Strand 2
A
359 364anti-parallel
Strand 3
A
402 406anti-parallel
Strand 4
A
384 386anti-parallel
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