Analysis of interatomic Contacts of Structural Units in PDB entry:
8D8X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D8X entry

There is 1 chain in PDB entry 8D8X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 21ARG 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8D8X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 55Right-handed alpha
Helix 2
AA2
A
78 88Right-handed alpha
Helix 3
AA3
A
107 111Right-handed 310
Helix 4
AA4
A
117 129Right-handed alpha
Helix 5
AA5
A
145 155Right-handed alpha
Helix 6
AA6
A
160 182Right-handed alpha
Helix 7
AA7
A
194 197Right-handed 310
Helix 8
AA8
A
198 204Right-handed alpha
Helix 9
AA9
A
206 229Right-handed alpha
Helix 10
AB1
A
240 251Right-handed alpha
Helix 11
AB2
A
252 256Right-handed 310
Helix 12
AB3
A
277 281Right-handed 310
Helix 13
AB4
A
290 303Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8D8X.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
31 36parallel
Strand 3
A
139 143parallel
Strand 4
A
186 190parallel
Strand 5
A
235 239parallel
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