Analysis of interatomic Contacts of Structural Units in PDB entry:
8D90


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D90 entry

There are 2 chains in PDB entry 8D90 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 21ARG 307
B
 HIS 21ARG 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8D90. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 55Right-handed alpha
Helix 2
AA2
A
78 88Right-handed alpha
Helix 3
AA3
A
107 111Right-handed 310
Helix 4
AA4
A
117 128Right-handed alpha
Helix 5
AA5
A
145 155Right-handed alpha
Helix 6
AA6
A
160 182Right-handed alpha
Helix 7
AA7
A
194 197Right-handed 310
Helix 8
AA8
A
198 204Right-handed alpha
Helix 9
AA9
A
206 233Right-handed alpha
Helix 10
AB1
A
240 251Right-handed alpha
Helix 11
AB2
A
252 256Right-handed 310
Helix 12
AB3
A
277 281Right-handed 310
Helix 13
AB4
A
290 302Right-handed alpha
Helix 14
AB5
A
303 305Right-handed 310
Helix 15
AB6
B
43 55Right-handed alpha
Helix 16
AB7
B
78 88Right-handed alpha
Helix 17
AB8
B
107 111Right-handed 310
Helix 18
AB9
B
117 130Right-handed alpha
Helix 19
AC1
B
145 155Right-handed alpha
Helix 20
AC2
B
160 183Right-handed alpha
Helix 21
AC3
B
194 197Right-handed 310
Helix 22
AC4
B
198 204Right-handed alpha
Helix 23
AC5
B
206 232Right-handed alpha
Helix 24
AC6
B
240 251Right-handed alpha
Helix 25
AC7
B
252 256Right-handed 310
Helix 26
AC8
B
277 281Right-handed 310
Helix 27
AC9
B
290 302Right-handed alpha
Helix 28
AD1
B
303 305Right-handed 310
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There are 2 sheets in PDB entry 8D90. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
31 36parallel
Strand 3
A
139 143parallel
Strand 4
A
186 190parallel
Strand 5
A
235 239parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 93first strand
Strand 2
B
31 36parallel
Strand 3
B
139 143parallel
Strand 4
B
186 190parallel
Strand 5
B
235 239parallel
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