Analysis of interatomic Contacts of Structural Units in PDB entry:
8D96


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D96 entry

There are 4 chains in PDB entry 8D96 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 270ASN 456
C
 GLU 338TYR 1251
E
 G 2 C 12
F
 A 4 A 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8D96. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
275 283Right-handed alpha
Helix 2
AA2
B
285 299Right-handed alpha
Helix 3
AA3
B
302 317Right-handed alpha
Helix 4
AA4
B
319 334Right-handed alpha
Helix 5
AA5
B
337 345Right-handed alpha
Helix 6
AA6
B
345 353Right-handed alpha
Helix 7
AA7
B
366 373Right-handed alpha
Helix 8
AA8
B
390 401Right-handed alpha
Helix 9
AA9
B
404 417Right-handed alpha
Helix 10
AB1
B
420 432Right-handed alpha
Helix 11
AB2
B
443 456Right-handed alpha
Helix 12
AB3
C
409 420Right-handed alpha
Helix 13
AB4
C
420 426Right-handed alpha
Helix 14
AB5
C
482 492Right-handed alpha
Helix 15
AB6
C
522 524Right-handed 310
Helix 16
AB7
C
597 606Right-handed alpha
Helix 17
AB8
C
614 630Right-handed alpha
Helix 18
AB9
C
642 655Right-handed alpha
Helix 19
AC1
C
658 663Right-handed 310
Helix 20
AC2
C
679 685Right-handed alpha
Helix 21
AC3
C
693 701Right-handed alpha
Helix 22
AC4
C
707 716Right-handed alpha
Helix 23
AC5
C
725 733Right-handed 310
Helix 24
AC6
C
734 760Right-handed alpha
Helix 25
AC7
C
760 773Right-handed alpha
Helix 26
AC8
C
775 780Right-handed alpha
Helix 27
AC9
C
784 799Right-handed alpha
Helix 28
AD1
C
863 873Right-handed alpha
Helix 29
AD2
C
909 931Right-handed alpha
Helix 30
AD3
C
935 960Right-handed alpha
Helix 31
AD4
C
969 993Right-handed alpha
Helix 32
AD5
C
1014 1033Right-handed alpha
Helix 33
AD6
C
1077 1081Right-handed 310
Helix 34
AD7
C
1085 1101Right-handed alpha
Helix 35
AD8
C
1104 1126Right-handed alpha
Helix 36
AD9
C
1129 1134Right-handed 310
Helix 37
AE1
C
1142 1146Right-handed 310
Helix 38
AE2
C
1152 1165Right-handed alpha
Helix 39
AE3
C
1187 1190Right-handed 310
Helix 40
AE4
C
1194 1201Right-handed alpha
Helix 41
AE5
C
1207 1215Right-handed alpha
Helix 42
AE6
C
1215 1224Right-handed alpha
Helix 43
AE7
C
1231 1240Right-handed alpha
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There are 7 sheets in PDB entry 8D96. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
516 520first strand
Strand 2
C
372 381parallel
Strand 3
C
355 367anti-parallel
Strand 4
C
340 351anti-parallel
Strand 5
C
498 502anti-parallel
Strand 6
C
526 529anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
431 438first strand
Strand 2
C
449 458anti-parallel
Strand 3
C
384 391anti-parallel
Strand 4
C
473 477anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
609 612first strand
Strand 2
C
581 587parallel
Strand 3
C
555 568anti-parallel
Strand 4
C
537 548anti-parallel
Strand 5
C
633 636parallel
Strand 6
C
689 692parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
850 852first strand
Strand 2
C
1044 1051anti-parallel
Strand 3
C
1054 1064anti-parallel
Strand 4
C
1067 1075anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
997 1000first strand
Strand 2
C
1006 1009anti-parallel
Strand 3
C
856 861anti-parallel
Strand 4
C
1038 1040anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1135 1138first strand
Strand 2
C
1174 1181anti-parallel
Strand 3
C
1192 1193anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1135 1138first strand
Strand 2
C
1174 1181anti-parallel
Strand 3
C
1205 1206anti-parallel
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