Analysis of interatomic Contacts of Structural Units in PDB entry:
8D97

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D97 entry

There are 2 chains in PDB entry 8D97 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 1688
C	U 15	C 56

There are 52 helices in PDB entry 8D97. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	26	Right-handed 310
Helix 2	AA2	A	27	33	Right-handed alpha
Helix 3	AA3	A	54	73	Right-handed alpha
Helix 4	AA4	A	122	129	Right-handed alpha
Helix 5	AA5	A	163	168	Right-handed alpha
Helix 6	AA6	A	208	210	Right-handed 310
Helix 7	AA7	A	211	220	Right-handed alpha
Helix 8	AA8	A	262	282	Right-handed alpha
Helix 9	AA9	A	285	298	Right-handed alpha
Helix 10	AB1	A	299	302	Right-handed 310
Helix 11	AB2	A	303	308	Right-handed alpha
Helix 12	AB3	A	333	345	Right-handed alpha
Helix 13	AB4	A	349	369	Right-handed alpha
Helix 14	AB5	A	466	483	Right-handed alpha
Helix 15	AB6	A	498	505	Right-handed alpha
Helix 16	AB7	A	564	575	Right-handed alpha
Helix 17	AB8	A	589	593	Right-handed 310
Helix 18	AB9	A	612	620	Right-handed alpha
Helix 19	AC1	A	621	623	Right-handed 310
Helix 20	AC2	A	625	632	Right-handed alpha
Helix 21	AC3	A	633	637	Right-handed 310
Helix 22	AC4	A	653	659	Right-handed alpha
Helix 23	AC5	A	681	688	Right-handed alpha
Helix 24	AC6	A	718	735	Right-handed alpha
Helix 25	AC7	A	771	775	Right-handed 310
Helix 26	AC8	A	795	799	Right-handed 310
Helix 27	AC9	A	826	843	Right-handed alpha
Helix 28	AD1	A	868	877	Right-handed alpha
Helix 29	AD2	A	994	1011	Right-handed alpha
Helix 30	AD3	A	1034	1039	Right-handed 310
Helix 31	AD4	A	1042	1052	Right-handed alpha
Helix 32	AD5	A	1054	1058	Right-handed 310
Helix 33	AD6	A	1060	1069	Right-handed alpha
Helix 34	AD7	A	1083	1090	Right-handed alpha
Helix 35	AD8	A	1096	1107	Right-handed alpha
Helix 36	AD9	A	1144	1148	Right-handed 310
Helix 37	AE1	A	1152	1157	Right-handed alpha
Helix 38	AE2	A	1163	1201	Right-handed alpha
Helix 39	AE3	A	1201	1210	Right-handed alpha
Helix 40	AE4	A	1228	1230	Right-handed 310
Helix 41	AE5	A	1327	1341	Right-handed alpha
Helix 42	AE6	A	1346	1354	Right-handed alpha
Helix 43	AE7	A	1395	1399	Right-handed 310
Helix 44	AE8	A	1409	1415	Right-handed alpha
Helix 45	AE9	A	1458	1463	Right-handed alpha
Helix 46	AF1	A	1481	1486	Right-handed alpha
Helix 47	AF2	A	1488	1496	Right-handed alpha
Helix 48	AF3	A	1523	1535	Right-handed alpha
Helix 49	AF4	A	1581	1596	Right-handed alpha
Helix 50	AF5	A	1610	1613	Right-handed 310
Helix 51	AF6	A	1614	1624	Right-handed alpha
Helix 52	AF7	A	1668	1678	Right-handed alpha

There are 20 sheets in PDB entry 8D97. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	148	first strand
Strand 2	A	199	206	anti-parallel
Strand 3	A	151	153	anti-parallel
Strand 4	A	49	53	anti-parallel
Strand 5	A	37	41	anti-parallel
Strand 6	A	14	17	parallel
Strand 7	A	183	191	anti-parallel
Strand 8	A	2	9	first strand
Strand 9	A	230	235	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	176	first strand
Strand 2	A	183	191	anti-parallel
Strand 3	A	14	17	anti-parallel
Strand 4	A	37	41	parallel
Strand 5	A	49	53	anti-parallel
Strand 6	A	151	153	anti-parallel
Strand 7	A	199	206	anti-parallel
Strand 8	A	382	383	first strand

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	77	first strand
Strand 2	A	80	81	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	106	first strand
Strand 2	A	399	400	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	508	first strand
Strand 2	A	551	560	anti-parallel
Strand 3	A	409	419	anti-parallel
Strand 4	A	596	608	anti-parallel
Strand 5	A	584	585	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	508	first strand
Strand 2	A	551	560	anti-parallel
Strand 3	A	409	419	anti-parallel
Strand 4	A	596	608	anti-parallel
Strand 5	A	641	643	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	525	first strand
Strand 2	A	541	545	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	698	699	first strand
Strand 2	A	714	717	anti-parallel
Strand 3	A	762	769	anti-parallel
Strand 4	A	813	822	anti-parallel
Strand 5	A	664	673	anti-parallel
Strand 6	A	858	863	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	702	703	first strand
Strand 2	A	708	709	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	782	784	first strand
Strand 2	A	800	802	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	915	916	first strand
Strand 2	A	1637	1638	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	919	922	first strand
Strand 2	A	1473	1476	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	986	987	first strand
Strand 2	A	990	993	anti-parallel
Strand 3	A	1429	1433	anti-parallel
Strand 4	A	1512	1522	anti-parallel
Strand 5	A	945	955	anti-parallel
Strand 6	A	1554	1564	anti-parallel
Strand 7	A	1542	1543	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1424	1426	first strand
Strand 2	A	1512	1522	anti-parallel
Strand 3	A	945	955	anti-parallel
Strand 4	A	1554	1564	anti-parallel
Strand 5	A	1575	1576	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	981	982	first strand
Strand 2	A	1503	1505	parallel
Strand 3	A	1448	1450	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1323	1326	first strand
Strand 2	A	1124	1129	anti-parallel
Strand 3	A	1114	1121	anti-parallel
Strand 4	A	1367	1372	anti-parallel
Strand 5	A	1378	1382	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1131	1136	first strand
Strand 2	A	1232	1235	parallel
Strand 3	A	1215	1221	anti-parallel
Strand 4	A	1242	1247	anti-parallel
Strand 5	A	1310	1315	anti-parallel
Strand 6	A	1131	1136	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1255	1258	first strand
Strand 2	A	1302	1306	anti-parallel
Strand 3	A	1292	1299	anti-parallel
Strand 4	A	1263	1264	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1255	1258	first strand
Strand 2	A	1302	1306	anti-parallel
Strand 3	A	1292	1299	anti-parallel
Strand 4	A	1280	1282	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1416	1417	first strand
Strand 2	A	1420	1421	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D97

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D97