Analysis of interatomic Contacts of Structural Units in PDB entry:
8D9F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D9F entry

There are 3 chains in PDB entry 8D9F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 15	LEU 716
B	MET 1	VAL 1688
C	G 12	C 44

There are 71 helices in PDB entry 8D9F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	33	Right-handed alpha
Helix 2	AA2	A	37	59	Right-handed alpha
Helix 3	AA3	A	64	82	Right-handed alpha
Helix 4	AA4	A	90	110	Right-handed alpha
Helix 5	AA5	A	114	136	Right-handed alpha
Helix 6	AA6	A	141	155	Right-handed alpha
Helix 7	AA7	A	163	177	Right-handed alpha
Helix 8	AA8	A	180	190	Right-handed alpha
Helix 9	AA9	A	194	205	Right-handed alpha
Helix 10	AB1	A	208	224	Right-handed alpha
Helix 11	AB2	A	230	246	Right-handed alpha
Helix 12	AB3	A	250	267	Right-handed alpha
Helix 13	AB4	A	279	297	Right-handed alpha
Helix 14	AB5	A	304	322	Right-handed alpha
Helix 15	AB6	A	327	333	Right-handed alpha
Helix 16	AB7	A	338	362	Right-handed alpha
Helix 17	AB8	A	433	450	Right-handed alpha
Helix 18	AB9	A	454	469	Right-handed alpha
Helix 19	AC1	A	470	474	Right-handed 310
Helix 20	AC2	A	490	495	Right-handed 310
Helix 21	AC3	A	496	500	Right-handed 310
Helix 22	AC4	A	509	513	Right-handed 310
Helix 23	AC5	A	521	525	Right-handed 310
Helix 24	AC6	A	547	552	Right-handed alpha
Helix 25	AC7	A	566	572	Right-handed alpha
Helix 26	AC8	A	592	595	Right-handed 310
Helix 27	AC9	A	607	614	Right-handed alpha
Helix 28	AD1	A	644	652	Right-handed alpha
Helix 29	AD2	A	665	679	Right-handed alpha
Helix 30	AD3	A	683	691	Right-handed alpha
Helix 31	AD4	A	699	707	Right-handed alpha
Helix 32	AD5	B	22	26	Right-handed 310
Helix 33	AD6	B	27	33	Right-handed alpha
Helix 34	AD7	B	54	73	Right-handed alpha
Helix 35	AD8	B	122	129	Right-handed alpha
Helix 36	AD9	B	163	167	Right-handed alpha
Helix 37	AE1	B	208	210	Right-handed 310
Helix 38	AE2	B	211	222	Right-handed alpha
Helix 39	AE3	B	262	282	Right-handed alpha
Helix 40	AE4	B	284	302	Right-handed alpha
Helix 41	AE5	B	303	308	Right-handed alpha
Helix 42	AE6	B	334	345	Right-handed alpha
Helix 43	AE7	B	346	348	Right-handed 310
Helix 44	AE8	B	349	369	Right-handed alpha
Helix 45	AE9	B	429	433	Right-handed 310
Helix 46	AF1	B	466	483	Right-handed alpha
Helix 47	AF2	B	498	505	Right-handed alpha
Helix 48	AF3	B	564	575	Right-handed alpha
Helix 49	AF4	B	612	620	Right-handed alpha
Helix 50	AF5	B	621	623	Right-handed 310
Helix 51	AF6	B	625	632	Right-handed alpha
Helix 52	AF7	B	653	659	Right-handed alpha
Helix 53	AF8	B	660	662	Right-handed 310
Helix 54	AF9	B	681	688	Right-handed alpha
Helix 55	AG1	B	718	735	Right-handed alpha
Helix 56	AG2	B	736	739	Right-handed 310
Helix 57	AG3	B	749	754	Right-handed alpha
Helix 58	AG4	B	795	799	Right-handed 310
Helix 59	AG5	B	826	843	Right-handed alpha
Helix 60	AG6	B	868	878	Right-handed alpha
Helix 61	AG7	B	994	1010	Right-handed alpha
Helix 62	AG8	B	1395	1399	Right-handed 310
Helix 63	AG9	B	1409	1415	Right-handed alpha
Helix 64	AH1	B	1458	1463	Right-handed alpha
Helix 65	AH2	B	1481	1488	Right-handed alpha
Helix 66	AH3	B	1488	1496	Right-handed alpha
Helix 67	AH4	B	1523	1535	Right-handed alpha
Helix 68	AH5	B	1578	1597	Right-handed alpha
Helix 69	AH6	B	1610	1613	Right-handed 310
Helix 70	AH7	B	1614	1624	Right-handed alpha
Helix 71	AH8	B	1668	1678	Right-handed alpha

There are 25 sheets in PDB entry 8D9F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	324	325	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	431	first strand
Strand 2	A	413	420	anti-parallel
Strand 3	A	400	408	anti-parallel
Strand 4	A	483	487	parallel
Strand 5	A	516	518	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	536	540	first strand
Strand 2	A	579	583	parallel
Strand 3	A	621	624	parallel
Strand 4	A	656	660	parallel
Strand 5	A	709	712	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	586	587	first strand
Strand 2	A	597	598	anti-parallel
Strand 3	A	605	606	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	148	first strand
Strand 2	B	199	206	anti-parallel
Strand 3	B	151	153	anti-parallel
Strand 4	B	49	53	anti-parallel
Strand 5	B	37	41	anti-parallel
Strand 6	B	14	17	parallel
Strand 7	B	183	192	anti-parallel
Strand 8	B	168	176	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	148	first strand
Strand 2	B	199	206	anti-parallel
Strand 3	B	2	9	anti-parallel
Strand 4	B	228	235	anti-parallel
Strand 5	B	224	225	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	B	80	81	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	106	first strand
Strand 2	B	399	400	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	329	first strand
Strand 2	B	332	333	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	509	first strand
Strand 2	B	551	560	anti-parallel
Strand 3	B	409	419	anti-parallel
Strand 4	B	596	608	anti-parallel
Strand 5	B	584	585	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	509	first strand
Strand 2	B	551	560	anti-parallel
Strand 3	B	409	419	anti-parallel
Strand 4	B	596	608	anti-parallel
Strand 5	B	641	643	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	427	first strand
Strand 2	B	454	455	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	465	first strand
Strand 2	B	512	513	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	525	first strand
Strand 2	B	541	545	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	528	529	first strand
Strand 2	B	534	535	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	698	699	first strand
Strand 2	B	714	717	anti-parallel
Strand 3	B	767	769	anti-parallel
Strand 4	B	813	822	anti-parallel
Strand 5	B	762	764	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	698	699	first strand
Strand 2	B	714	717	anti-parallel
Strand 3	B	767	769	anti-parallel
Strand 4	B	813	822	anti-parallel
Strand 5	B	664	673	anti-parallel
Strand 6	B	858	863	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	694	695	first strand
Strand 2	B	800	803	parallel
Strand 3	B	782	784	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	702	703	first strand
Strand 2	B	708	709	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	915	916	first strand
Strand 2	B	1637	1638	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	919	922	first strand
Strand 2	B	1473	1476	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	986	987	first strand
Strand 2	B	990	993	anti-parallel
Strand 3	B	1429	1433	anti-parallel
Strand 4	B	1512	1522	anti-parallel
Strand 5	B	945	955	anti-parallel
Strand 6	B	1554	1565	anti-parallel
Strand 7	B	1542	1543	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1424	1426	first strand
Strand 2	B	1512	1522	anti-parallel
Strand 3	B	945	955	anti-parallel
Strand 4	B	1554	1565	anti-parallel
Strand 5	B	1575	1576	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1416	1417	first strand
Strand 2	B	1420	1421	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1448	1450	first strand
Strand 2	B	1503	1505	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D9F

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D9F