Analysis of interatomic Contacts of Structural Units in PDB entry:
8D9H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D9H entry

There are 4 chains in PDB entry 8D9H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	VAL 1688
C	G 12	A 47
D	U 19	U 38
E	THR 15	LEU 716

There are 69 helices in PDB entry 8D9H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	22	26	Right-handed 310
Helix 2	AA2	B	27	34	Right-handed alpha
Helix 3	AA3	B	54	73	Right-handed alpha
Helix 4	AA4	B	122	129	Right-handed alpha
Helix 5	AA5	B	211	222	Right-handed alpha
Helix 6	AA6	B	264	282	Right-handed alpha
Helix 7	AA7	B	286	298	Right-handed alpha
Helix 8	AA8	B	299	302	Right-handed 310
Helix 9	AA9	B	303	308	Right-handed alpha
Helix 10	AB1	B	333	345	Right-handed alpha
Helix 11	AB2	B	349	369	Right-handed alpha
Helix 12	AB3	B	430	434	Right-handed 310
Helix 13	AB4	B	466	482	Right-handed alpha
Helix 14	AB5	B	498	505	Right-handed alpha
Helix 15	AB6	B	564	575	Right-handed alpha
Helix 16	AB7	B	612	620	Right-handed alpha
Helix 17	AB8	B	621	623	Right-handed 310
Helix 18	AB9	B	625	632	Right-handed alpha
Helix 19	AC1	B	633	637	Right-handed 310
Helix 20	AC2	B	653	659	Right-handed alpha
Helix 21	AC3	B	660	664	Right-handed 310
Helix 22	AC4	B	681	687	Right-handed alpha
Helix 23	AC5	B	718	735	Right-handed alpha
Helix 24	AC6	B	826	842	Right-handed alpha
Helix 25	AC7	B	868	877	Right-handed alpha
Helix 26	AC8	B	994	1011	Right-handed alpha
Helix 27	AC9	B	1389	1394	Right-handed alpha
Helix 28	AD1	B	1395	1399	Right-handed 310
Helix 29	AD2	B	1409	1416	Right-handed alpha
Helix 30	AD3	B	1458	1463	Right-handed alpha
Helix 31	AD4	B	1481	1488	Right-handed alpha
Helix 32	AD5	B	1488	1496	Right-handed alpha
Helix 33	AD6	B	1497	1500	Right-handed 310
Helix 34	AD7	B	1523	1535	Right-handed alpha
Helix 35	AD8	B	1578	1597	Right-handed alpha
Helix 36	AD9	B	1610	1613	Right-handed 310
Helix 37	AE1	B	1614	1624	Right-handed alpha
Helix 38	AE2	B	1668	1678	Right-handed alpha
Helix 39	AE3	E	16	32	Right-handed alpha
Helix 40	AE4	E	37	59	Right-handed alpha
Helix 41	AE5	E	64	82	Right-handed alpha
Helix 42	AE6	E	90	110	Right-handed alpha
Helix 43	AE7	E	114	136	Right-handed alpha
Helix 44	AE8	E	141	155	Right-handed alpha
Helix 45	AE9	E	163	177	Right-handed alpha
Helix 46	AF1	E	180	182	Right-handed 310
Helix 47	AF2	E	183	190	Right-handed alpha
Helix 48	AF3	E	194	205	Right-handed alpha
Helix 49	AF4	E	208	224	Right-handed alpha
Helix 50	AF5	E	230	246	Right-handed alpha
Helix 51	AF6	E	250	267	Right-handed alpha
Helix 52	AF7	E	279	296	Right-handed alpha
Helix 53	AF8	E	304	323	Right-handed alpha
Helix 54	AF9	E	327	333	Right-handed alpha
Helix 55	AG1	E	338	362	Right-handed alpha
Helix 56	AG2	E	434	450	Right-handed alpha
Helix 57	AG3	E	454	469	Right-handed alpha
Helix 58	AG4	E	470	473	Right-handed 310
Helix 59	AG5	E	496	500	Right-handed 310
Helix 60	AG6	E	509	514	Right-handed alpha
Helix 61	AG7	E	521	525	Right-handed 310
Helix 62	AG8	E	547	552	Right-handed alpha
Helix 63	AG9	E	566	572	Right-handed alpha
Helix 64	AH1	E	592	595	Right-handed 310
Helix 65	AH2	E	607	611	Right-handed alpha
Helix 66	AH3	E	644	652	Right-handed alpha
Helix 67	AH4	E	665	679	Right-handed alpha
Helix 68	AH5	E	684	691	Right-handed alpha
Helix 69	AH6	E	699	707	Right-handed alpha

There are 16 sheets in PDB entry 8D9H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	148	first strand
Strand 2	B	199	206	anti-parallel
Strand 3	B	151	153	anti-parallel
Strand 4	B	48	53	anti-parallel
Strand 5	B	37	41	anti-parallel
Strand 6	B	13	16	parallel
Strand 7	B	183	192	anti-parallel
Strand 8	B	169	176	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	163	first strand
Strand 2	B	48	53	anti-parallel
Strand 3	B	151	153	anti-parallel
Strand 4	B	199	206	anti-parallel
Strand 5	B	2	9	anti-parallel
Strand 6	B	228	235	anti-parallel
Strand 7	B	224	225	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	508	first strand
Strand 2	B	551	560	anti-parallel
Strand 3	B	409	419	anti-parallel
Strand 4	B	596	608	anti-parallel
Strand 5	B	584	585	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	508	first strand
Strand 2	B	551	560	anti-parallel
Strand 3	B	409	419	anti-parallel
Strand 4	B	596	608	anti-parallel
Strand 5	B	641	643	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	465	first strand
Strand 2	B	512	513	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	526	first strand
Strand 2	B	540	545	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	698	699	first strand
Strand 2	B	714	717	anti-parallel
Strand 3	B	767	769	anti-parallel
Strand 4	B	813	821	anti-parallel
Strand 5	B	762	764	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	698	699	first strand
Strand 2	B	714	717	anti-parallel
Strand 3	B	767	769	anti-parallel
Strand 4	B	813	821	anti-parallel
Strand 5	B	667	673	anti-parallel
Strand 6	B	858	863	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	782	785	first strand
Strand 2	B	799	802	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	919	922	first strand
Strand 2	B	1473	1476	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	986	987	first strand
Strand 2	B	990	993	anti-parallel
Strand 3	B	1429	1433	anti-parallel
Strand 4	B	1512	1522	anti-parallel
Strand 5	B	945	955	anti-parallel
Strand 6	B	1554	1564	anti-parallel
Strand 7	B	1542	1543	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1424	1426	first strand
Strand 2	B	1512	1522	anti-parallel
Strand 3	B	945	955	anti-parallel
Strand 4	B	1554	1564	anti-parallel
Strand 5	B	1575	1576	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	980	982	first strand
Strand 2	B	1502	1505	parallel
Strand 3	B	1448	1450	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	425	431	first strand
Strand 2	E	413	420	anti-parallel
Strand 3	E	400	408	anti-parallel
Strand 4	E	483	487	parallel
Strand 5	E	516	517	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	538	540	first strand
Strand 2	E	581	583	parallel
Strand 3	E	622	624	parallel
Strand 4	E	657	660	parallel
Strand 5	E	709	712	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	586	587	first strand
Strand 2	E	597	598	anti-parallel
Strand 3	E	605	606	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D9H

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D9H