Analysis of interatomic Contacts of Structural Units in PDB entry:
8D9N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D9N entry

There are 2 chains in PDB entry 8D9N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 420ASP 909
B
 SER 420ASP 909
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8D9N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
420 449Right-handed alpha
Helix 2
AA2
A
455 471Right-handed alpha
Helix 3
AA3
A
483 500Right-handed alpha
Helix 4
AA4
A
503 525Right-handed alpha
Helix 5
AA5
A
527 534Right-handed 310
Helix 6
AA6
A
535 565Right-handed alpha
Helix 7
AA7
A
590 611Right-handed alpha
Helix 8
AA8
A
616 625Right-handed alpha
Helix 9
AA9
A
626 631Right-handed alpha
Helix 10
AB1
A
632 642Right-handed alpha
Helix 11
AB2
A
678 682Right-handed 310
Helix 12
AB3
A
686 703Right-handed alpha
Helix 13
AB4
A
721 734Right-handed alpha
Helix 14
AB5
A
776 791Right-handed alpha
Helix 15
AB6
A
794 799Right-handed alpha
Helix 16
AB7
A
802 820Right-handed alpha
Helix 17
AB8
A
823 832Right-handed alpha
Helix 18
AB9
A
847 871Right-handed alpha
Helix 19
AC1
A
877 884Right-handed alpha
Helix 20
AC2
A
884 891Right-handed alpha
Helix 21
AC3
A
892 897Right-handed alpha
Helix 22
AC4
A
898 903Right-handed alpha
Helix 23
AC5
B
421 449Right-handed alpha
Helix 24
AC6
B
455 471Right-handed alpha
Helix 25
AC7
B
483 500Right-handed alpha
Helix 26
AC8
B
503 525Right-handed alpha
Helix 27
AC9
B
527 534Right-handed 310
Helix 28
AD1
B
535 565Right-handed alpha
Helix 29
AD2
B
590 611Right-handed alpha
Helix 30
AD3
B
616 625Right-handed alpha
Helix 31
AD4
B
626 631Right-handed alpha
Helix 32
AD5
B
632 642Right-handed alpha
Helix 33
AD6
B
678 682Right-handed 310
Helix 34
AD7
B
686 703Right-handed alpha
Helix 35
AD8
B
721 734Right-handed alpha
Helix 36
AD9
B
776 791Right-handed alpha
Helix 37
AE1
B
794 799Right-handed alpha
Helix 38
AE2
B
802 820Right-handed alpha
Helix 39
AE3
B
823 832Right-handed alpha
Helix 40
AE4
B
847 871Right-handed alpha
Helix 41
AE5
B
877 884Right-handed alpha
Helix 42
AE6
B
884 891Right-handed alpha
Helix 43
AE7
B
892 897Right-handed alpha
Helix 44
AE8
B
898 903Right-handed alpha
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There are 2 sheets in PDB entry 8D9N. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 481first strand
Strand 2
A
743 744anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
480 481first strand
Strand 2
B
743 744anti-parallel
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