Analysis of interatomic Contacts of Structural Units in PDB entry:
8DA4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DA4 entry

There are 15 chains in PDB entry 8DA4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2LEU 34
A
 ASP 36PRO 57
B
 ASN 3GLN 26
B
 ALA 29ALA 48
B
 LEU 51LYS 58
C
 VAL 1LEU 34
C
 ASP 36PRO 57
D
 PHE 5GLN 26
D
 LYS 28ALA 48
D
 LEU 51PRO 57
E
 LYS 4LEU 34
E
 ASP 36PRO 57
F
 ASN 3GLN 26
F
 LYS 28ALA 48
F
 LEU 51ALA 56
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8DA4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 19Right-handed alpha
Helix 2
AA2
A
23 37Right-handed alpha
Helix 3
AA3
A
40 55Right-handed alpha
Helix 4
AA4
B
6 17Right-handed alpha
Helix 5
AA5
B
23 37Right-handed alpha
Helix 6
AA6
B
40 55Right-handed alpha
Helix 7
AA7
C
3 19Right-handed alpha
Helix 8
AA8
C
23 37Right-handed alpha
Helix 9
AA9
C
40 55Right-handed alpha
Helix 10
AB1
D
7 18Right-handed alpha
Helix 11
AB2
D
23 37Right-handed alpha
Helix 12
AB3
D
40 55Right-handed alpha
Helix 13
AB4
E
5 19Right-handed alpha
Helix 14
AB5
E
23 37Right-handed alpha
Helix 15
AB6
E
40 56Right-handed alpha
Helix 16
AB7
F
6 18Right-handed alpha
Helix 17
AB8
F
23 37Right-handed alpha
Helix 18
AB9
F
40 56Right-handed alpha
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There are no sheets in PDB entry 8DA4
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il