Analysis of interatomic Contacts of Structural Units in PDB entry:
8DAE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DAE entry

There is 1 chain in PDB entry 8DAE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 19LYS 512
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8DAE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 57Right-handed alpha
Helix 2
AA2
A
71 77Right-handed alpha
Helix 3
AA3
A
111 120Right-handed alpha
Helix 4
AA4
A
123 127Right-handed alpha
Helix 5
AA5
A
136 144Right-handed alpha
Helix 6
AA6
A
227 232Right-handed alpha
Helix 7
AA7
A
235 250Right-handed alpha
Helix 8
AA8
A
286 300Right-handed alpha
Helix 9
AA9
A
304 309Right-handed alpha
Helix 10
AB1
A
315 319Right-handed 310
Helix 11
AB2
A
320 327Right-handed alpha
Helix 12
AB3
A
340 348Right-handed alpha
Helix 13
AB4
A
365 377Right-handed alpha
Helix 14
AB5
A
389 396Right-handed 310
Helix 15
AB6
A
427 447Right-handed alpha
Helix 16
AB7
A
467 475Right-handed alpha
Helix 17
AB8
A
493 497Right-handed 310
Helix 18
AB9
A
498 500Right-handed 310
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There are 5 sheets in PDB entry 8DAE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 109first strand
Strand 2
A
88 92parallel
Strand 3
A
64 70parallel
Strand 4
A
128 133parallel
Strand 5
A
22 29parallel
Strand 6
A
149 158parallel
Strand 7
A
189 198anti-parallel
Strand 8
A
175 180anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 109first strand
Strand 2
A
88 92parallel
Strand 3
A
64 70parallel
Strand 4
A
128 133parallel
Strand 5
A
22 29parallel
Strand 6
A
149 158parallel
Strand 7
A
189 198anti-parallel
Strand 8
A
184 186anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
165 166anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 254first strand
Strand 2
A
260 272anti-parallel
Strand 3
A
450 464anti-parallel
Strand 4
A
413 424parallel
Strand 5
A
402 410anti-parallel
Strand 6
A
384 386anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 487first strand
Strand 2
A
502 505anti-parallel
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