Analysis of interatomic Contacts of Structural Units in PDB entry:
8DAF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DAF entry

There are 4 chains in PDB entry 8DAF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 221LYS 459
B
 PRO 221LYS 459
C
 GLU 741ASP 752
D
 GLU 741LYS 751
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8DAF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
224 234Right-handed alpha
Helix 2
AA2
A
236 245Right-handed alpha
Helix 3
AA3
A
261 283Right-handed alpha
Helix 4
AA4
A
285 289Right-handed 310
Helix 5
AA5
A
290 317Right-handed alpha
Helix 6
AA6
A
333 340Right-handed alpha
Helix 7
AA7
A
341 361Right-handed alpha
Helix 8
AA8
A
364 377Right-handed alpha
Helix 9
AA9
A
380 384Right-handed 310
Helix 10
AB1
A
386 409Right-handed alpha
Helix 11
AB2
A
414 443Right-handed alpha
Helix 12
AB3
A
450 457Right-handed alpha
Helix 13
AB4
B
224 233Right-handed alpha
Helix 14
AB5
B
236 250Right-handed alpha
Helix 15
AB6
B
259 283Right-handed alpha
Helix 16
AB7
B
290 317Right-handed alpha
Helix 17
AB8
B
333 340Right-handed alpha
Helix 18
AB9
B
341 361Right-handed alpha
Helix 19
AC1
B
364 377Right-handed alpha
Helix 20
AC2
B
380 384Right-handed 310
Helix 21
AC3
B
386 409Right-handed alpha
Helix 22
AC4
B
414 443Right-handed alpha
Helix 23
AC5
B
450 457Right-handed alpha
Helix 24
AC6
C
742 751Right-handed alpha
Helix 25
AC7
D
742 749Right-handed alpha
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There are 2 sheets in PDB entry 8DAF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 324first strand
Strand 2
A
330 332anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 324first strand
Strand 2
B
330 332anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il