Analysis of interatomic Contacts of Structural Units in PDB entry:
8DAM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DAM entry

There are 3 chains in PDB entry 8DAM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 70PRO 419
B
 GLN 2SER 123
C
 GLY 1VAL 128
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8DAM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 96Right-handed alpha
Helix 2
AA2
A
97 99Right-handed 310
Helix 3
AA3
A
114 118Right-handed 310
Helix 4
AA4
A
161 176Right-handed alpha
Helix 5
AA5
A
242 260Right-handed alpha
Helix 6
AA6
A
272 276Right-handed 310
Helix 7
AA7
A
288 295Right-handed alpha
Helix 8
AA8
A
299 313Right-handed alpha
Helix 9
AA9
A
328 333Right-handed 310
Helix 10
AB1
A
348 357Right-handed alpha
Helix 11
AB2
A
367 380Right-handed alpha
Helix 12
AB3
A
381 385Right-handed 310
Helix 13
AB4
A
393 413Right-handed alpha
Helix 14
AB5
A
414 418Right-handed 310
Helix 15
AB6
B
29 33Right-handed 310
Helix 16
AB7
B
63 66Right-handed 310
Helix 17
AB8
B
88 92Right-handed 310
Helix 18
AB9
B
106 110Right-handed 310
Helix 19
AC1
C
63 66Right-handed 310
Helix 20
AC2
C
88 92Right-handed 310
Helix 21
AC3
C
107 115Right-handed 310
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There are 9 sheets in PDB entry 8DAM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 160first strand
Strand 2
A
144 149anti-parallel
Strand 3
A
133 139anti-parallel
Strand 4
A
103 107anti-parallel
Strand 5
A
223 226anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
C
105 106anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 269first strand
Strand 2
A
318 323parallel
Strand 3
A
232 235parallel
Strand 4
A
340 344parallel
Strand 5
A
387 389parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 8first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
79 84anti-parallel
Strand 4
B
69 74anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 14first strand
Strand 2
B
117 122parallel
Strand 3
B
93 100anti-parallel
Strand 4
B
34 40anti-parallel
Strand 5
B
47 52anti-parallel
Strand 6
B
59 61anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 14first strand
Strand 2
B
117 122parallel
Strand 3
B
93 100anti-parallel
Strand 4
B
112 113anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 8first strand
Strand 2
C
19 26anti-parallel
Strand 3
C
79 84anti-parallel
Strand 4
C
69 74anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
124 127parallel
Strand 3
C
93 100anti-parallel
Strand 4
C
35 40anti-parallel
Strand 5
C
47 52anti-parallel
Strand 6
C
59 61anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
124 127parallel
Strand 3
C
93 100anti-parallel
Strand 4
C
117 120anti-parallel
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