Analysis of interatomic Contacts of Structural Units in PDB entry:
8DAR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DAR entry

There are 8 chains in PDB entry 8DAR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 71	GLY 789
B	LYS 21	GLY 789
C	GLY 71	GLN 790
D	GLY 71	GLN 790
E	MET 208	SER 787
F	GLY 71	SER 787
G	ARG 107	GLY 580
H	LEU 228	GLU 310

There are204 helices in PDB entry 8DAR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	97	103	Right-handed alpha
Helix 2	AA2	A	212	216	Right-handed 310
Helix 3	AA3	A	220	236	Right-handed alpha
Helix 4	AA4	A	238	244	Right-handed alpha
Helix 5	AA5	A	260	273	Right-handed alpha
Helix 6	AA6	A	280	285	Right-handed alpha
Helix 7	AA7	A	291	305	Right-handed alpha
Helix 8	AA8	A	315	320	Right-handed alpha
Helix 9	AA9	A	322	326	Right-handed 310
Helix 10	AB1	A	329	344	Right-handed alpha
Helix 11	AB2	A	359	363	Right-handed 310
Helix 12	AB3	A	364	368	Right-handed 310
Helix 13	AB4	A	383	395	Right-handed alpha
Helix 14	AB5	A	405	413	Right-handed alpha
Helix 15	AB6	A	417	437	Right-handed alpha
Helix 16	AB7	A	438	440	Right-handed 310
Helix 17	AB8	A	448	453	Right-handed alpha
Helix 18	AB9	A	458	468	Right-handed alpha
Helix 19	AC1	A	472	476	Right-handed 310
Helix 20	AC2	A	492	509	Right-handed alpha
Helix 21	AC3	A	509	516	Right-handed alpha
Helix 22	AC4	A	534	545	Right-handed alpha
Helix 23	AC5	A	553	563	Right-handed alpha
Helix 24	AC6	A	568	579	Right-handed alpha
Helix 25	AC7	A	588	592	Right-handed 310
Helix 26	AC8	A	609	620	Right-handed alpha
Helix 27	AC9	A	635	639	Right-handed 310
Helix 28	AD1	A	640	645	Right-handed 310
Helix 29	AD2	A	659	671	Right-handed alpha
Helix 30	AD3	A	682	689	Right-handed alpha
Helix 31	AD4	A	693	719	Right-handed alpha
Helix 32	AD5	A	754	764	Right-handed alpha
Helix 33	AD6	A	770	789	Right-handed alpha
Helix 34	AD7	B	212	216	Right-handed 310
Helix 35	AD8	B	219	236	Right-handed alpha
Helix 36	AD9	B	237	244	Right-handed alpha
Helix 37	AE1	B	260	273	Right-handed alpha
Helix 38	AE2	B	281	286	Right-handed alpha
Helix 39	AE3	B	290	306	Right-handed alpha
Helix 40	AE4	B	315	320	Right-handed alpha
Helix 41	AE5	B	322	326	Right-handed 310
Helix 42	AE6	B	329	344	Right-handed alpha
Helix 43	AE7	B	359	363	Right-handed 310
Helix 44	AE8	B	364	368	Right-handed 310
Helix 45	AE9	B	383	395	Right-handed alpha
Helix 46	AF1	B	405	413	Right-handed alpha
Helix 47	AF2	B	417	437	Right-handed alpha
Helix 48	AF3	B	438	440	Right-handed 310
Helix 49	AF4	B	448	454	Right-handed alpha
Helix 50	AF5	B	458	469	Right-handed alpha
Helix 51	AF6	B	472	476	Right-handed 310
Helix 52	AF7	B	492	509	Right-handed alpha
Helix 53	AF8	B	509	517	Right-handed alpha
Helix 54	AF9	B	533	545	Right-handed alpha
Helix 55	AG1	B	553	562	Right-handed alpha
Helix 56	AG2	B	568	579	Right-handed alpha
Helix 57	AG3	B	588	592	Right-handed 310
Helix 58	AG4	B	609	620	Right-handed alpha
Helix 59	AG5	B	635	639	Right-handed 310
Helix 60	AG6	B	640	645	Right-handed 310
Helix 61	AG7	B	659	672	Right-handed alpha
Helix 62	AG8	B	682	689	Right-handed alpha
Helix 63	AG9	B	693	719	Right-handed alpha
Helix 64	AH1	B	754	764	Right-handed alpha
Helix 65	AH2	B	770	788	Right-handed alpha
Helix 66	AH3	C	71	75	Right-handed 310
Helix 67	AH4	C	207	211	Right-handed 310
Helix 68	AH5	C	212	216	Right-handed 310
Helix 69	AH6	C	219	236	Right-handed alpha
Helix 70	AH7	C	237	244	Right-handed alpha
Helix 71	AH8	C	260	273	Right-handed alpha
Helix 72	AH9	C	281	286	Right-handed alpha
Helix 73	AI1	C	291	306	Right-handed alpha
Helix 74	AI2	C	315	319	Right-handed 310
Helix 75	AI3	C	322	327	Right-handed alpha
Helix 76	AI4	C	328	345	Right-handed alpha
Helix 77	AI5	C	359	363	Right-handed 310
Helix 78	AI6	C	364	368	Right-handed 310
Helix 79	AI7	C	383	395	Right-handed alpha
Helix 80	AI8	C	405	413	Right-handed alpha
Helix 81	AI9	C	417	437	Right-handed alpha
Helix 82	AJ1	C	438	440	Right-handed 310
Helix 83	AJ2	C	448	454	Right-handed alpha
Helix 84	AJ3	C	458	468	Right-handed alpha
Helix 85	AJ4	C	472	476	Right-handed 310
Helix 86	AJ5	C	492	509	Right-handed alpha
Helix 87	AJ6	C	509	517	Right-handed alpha
Helix 88	AJ7	C	533	545	Right-handed alpha
Helix 89	AJ8	C	553	563	Right-handed alpha
Helix 90	AJ9	C	568	579	Right-handed alpha
Helix 91	AK1	C	609	621	Right-handed alpha
Helix 92	AK2	C	640	645	Right-handed 310
Helix 93	AK3	C	659	671	Right-handed alpha
Helix 94	AK4	C	682	689	Right-handed alpha
Helix 95	AK5	C	693	719	Right-handed alpha
Helix 96	AK6	C	754	764	Right-handed alpha
Helix 97	AK7	C	770	788	Right-handed alpha
Helix 98	AK8	D	212	216	Right-handed 310
Helix 99	AK9	D	219	236	Right-handed alpha
Helix 100	AL1	D	237	244	Right-handed alpha
Helix 101	AL2	D	260	273	Right-handed alpha
Helix 102	AL3	D	281	286	Right-handed alpha
Helix 103	AL4	D	291	306	Right-handed alpha
Helix 104	AL5	D	315	319	Right-handed 310
Helix 105	AL6	D	322	326	Right-handed 310
Helix 106	AL7	D	328	344	Right-handed alpha
Helix 107	AL8	D	359	363	Right-handed 310
Helix 108	AL9	D	364	368	Right-handed 310
Helix 109	AM1	D	383	395	Right-handed alpha
Helix 110	AM2	D	405	413	Right-handed alpha
Helix 111	AM3	D	417	437	Right-handed alpha
Helix 112	AM4	D	438	440	Right-handed 310
Helix 113	AM5	D	448	454	Right-handed alpha
Helix 114	AM6	D	458	468	Right-handed alpha
Helix 115	AM7	D	472	476	Right-handed 310
Helix 116	AM8	D	492	509	Right-handed alpha
Helix 117	AM9	D	509	517	Right-handed alpha
Helix 118	AN1	D	533	545	Right-handed alpha
Helix 119	AN2	D	553	563	Right-handed alpha
Helix 120	AN3	D	568	579	Right-handed alpha
Helix 121	AN4	D	588	592	Right-handed 310
Helix 122	AN5	D	609	620	Right-handed alpha
Helix 123	AN6	D	635	639	Right-handed 310
Helix 124	AN7	D	640	645	Right-handed 310
Helix 125	AN8	D	659	671	Right-handed alpha
Helix 126	AN9	D	682	689	Right-handed alpha
Helix 127	AO1	D	693	719	Right-handed alpha
Helix 128	AO2	D	754	764	Right-handed alpha
Helix 129	AO3	D	770	789	Right-handed alpha
Helix 130	AO4	E	212	216	Right-handed 310
Helix 131	AO5	E	219	236	Right-handed alpha
Helix 132	AO6	E	236	244	Right-handed alpha
Helix 133	AO7	E	260	273	Right-handed alpha
Helix 134	AO8	E	280	286	Right-handed alpha
Helix 135	AO9	E	290	306	Right-handed alpha
Helix 136	AP1	E	315	319	Right-handed 310
Helix 137	AP2	E	329	344	Right-handed alpha
Helix 138	AP3	E	364	368	Right-handed 310
Helix 139	AP4	E	383	395	Right-handed alpha
Helix 140	AP5	E	405	413	Right-handed alpha
Helix 141	AP6	E	417	437	Right-handed alpha
Helix 142	AP7	E	438	440	Right-handed 310
Helix 143	AP8	E	448	454	Right-handed alpha
Helix 144	AP9	E	458	468	Right-handed alpha
Helix 145	AQ1	E	472	476	Right-handed 310
Helix 146	AQ2	E	492	509	Right-handed alpha
Helix 147	AQ3	E	509	517	Right-handed alpha
Helix 148	AQ4	E	533	545	Right-handed alpha
Helix 149	AQ5	E	553	562	Right-handed alpha
Helix 150	AQ6	E	568	579	Right-handed alpha
Helix 151	AQ7	E	588	592	Right-handed 310
Helix 152	AQ8	E	609	621	Right-handed alpha
Helix 153	AQ9	E	635	639	Right-handed 310
Helix 154	AR1	E	640	645	Right-handed 310
Helix 155	AR2	E	659	671	Right-handed alpha
Helix 156	AR3	E	682	689	Right-handed alpha
Helix 157	AR4	E	693	719	Right-handed alpha
Helix 158	AR5	E	754	764	Right-handed alpha
Helix 159	AR6	E	770	787	Right-handed alpha
Helix 160	AR7	F	212	216	Right-handed 310
Helix 161	AR8	F	219	236	Right-handed alpha
Helix 162	AR9	F	237	244	Right-handed alpha
Helix 163	AS1	F	260	273	Right-handed alpha
Helix 164	AS2	F	281	286	Right-handed alpha
Helix 165	AS3	F	291	306	Right-handed alpha
Helix 166	AS4	F	316	319	Right-handed 310
Helix 167	AS5	F	328	344	Right-handed alpha
Helix 168	AS6	F	364	368	Right-handed 310
Helix 169	AS7	F	383	395	Right-handed alpha
Helix 170	AS8	F	405	413	Right-handed alpha
Helix 171	AS9	F	417	437	Right-handed alpha
Helix 172	AT1	F	438	440	Right-handed 310
Helix 173	AT2	F	448	454	Right-handed alpha
Helix 174	AT3	F	458	468	Right-handed alpha
Helix 175	AT4	F	472	476	Right-handed 310
Helix 176	AT5	F	492	509	Right-handed alpha
Helix 177	AT6	F	509	517	Right-handed alpha
Helix 178	AT7	F	533	545	Right-handed alpha
Helix 179	AT8	F	553	562	Right-handed alpha
Helix 180	AT9	F	568	579	Right-handed alpha
Helix 181	AU1	F	588	592	Right-handed 310
Helix 182	AU2	F	609	620	Right-handed alpha
Helix 183	AU3	F	635	639	Right-handed 310
Helix 184	AU4	F	640	645	Right-handed 310
Helix 185	AU5	F	659	671	Right-handed alpha
Helix 186	AU6	F	682	688	Right-handed alpha
Helix 187	AU7	F	693	719	Right-handed alpha
Helix 188	AU8	F	754	763	Right-handed alpha
Helix 189	AU9	F	770	787	Right-handed alpha
Helix 190	AV1	G	116	125	Right-handed alpha
Helix 191	AV2	G	155	163	Right-handed alpha
Helix 192	AV3	G	168	180	Right-handed alpha
Helix 193	AV4	G	210	214	Right-handed 310
Helix 194	AV5	G	242	256	Right-handed alpha
Helix 195	AV6	G	299	318	Right-handed alpha
Helix 196	AV7	G	351	364	Right-handed alpha
Helix 197	AV8	G	402	410	Right-handed alpha
Helix 198	AV9	G	500	508	Right-handed alpha
Helix 199	AW1	G	516	525	Right-handed alpha
Helix 200	AW2	G	526	537	Right-handed alpha
Helix 201	AW3	G	540	553	Right-handed alpha
Helix 202	AW4	G	556	566	Right-handed alpha
Helix 203	AW5	G	566	579	Right-handed alpha
Helix 204	AW6	H	243	253	Right-handed alpha

There are 17 sheets in PDB entry 8DAR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	278	first strand
Strand 2	A	309	314	parallel
Strand 3	A	351	357	parallel
Strand 4	A	251	254	parallel
Strand 5	A	375	378	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	552	first strand
Strand 2	A	582	586	parallel
Strand 3	A	627	633	parallel
Strand 4	A	523	527	parallel
Strand 5	A	651	654	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	378	first strand
Strand 2	B	251	254	parallel
Strand 3	B	351	357	parallel
Strand 4	B	309	314	parallel
Strand 5	B	275	280	parallel
Strand 6	G	215	216	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	548	552	first strand
Strand 2	B	582	586	parallel
Strand 3	B	627	633	parallel
Strand 4	B	523	527	parallel
Strand 5	B	651	654	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	276	first strand
Strand 2	C	309	314	parallel
Strand 3	C	279	280	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	276	first strand
Strand 2	C	309	314	parallel
Strand 3	C	351	357	parallel
Strand 4	C	250	254	parallel
Strand 5	C	376	378	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	550	552	first strand
Strand 2	C	582	586	parallel
Strand 3	C	627	633	parallel
Strand 4	C	523	527	parallel
Strand 5	C	651	654	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	275	280	first strand
Strand 2	D	309	314	parallel
Strand 3	D	351	357	parallel
Strand 4	D	250	254	parallel
Strand 5	D	375	378	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	548	552	first strand
Strand 2	D	582	586	parallel
Strand 3	D	627	633	parallel
Strand 4	D	523	527	parallel
Strand 5	D	651	654	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	312	313	first strand
Strand 2	E	353	357	parallel
Strand 3	E	250	254	parallel
Strand 4	E	376	378	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	548	552	first strand
Strand 2	E	582	586	parallel
Strand 3	E	627	633	parallel
Strand 4	E	523	527	parallel
Strand 5	E	652	654	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	275	280	first strand
Strand 2	F	309	314	parallel
Strand 3	F	351	357	parallel
Strand 4	F	250	254	parallel
Strand 5	F	375	378	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	550	552	first strand
Strand 2	F	582	586	parallel
Strand 3	F	627	633	parallel
Strand 4	F	524	527	parallel
Strand 5	F	651	654	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	224	226	first strand
Strand 2	G	437	442	parallel
Strand 3	G	448	452	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	463	465	first strand
Strand 2	G	396	401	anti-parallel
Strand 3	G	382	386	anti-parallel
Strand 4	G	320	327	parallel
Strand 5	G	260	270	anti-parallel
Strand 6	G	276	285	anti-parallel
Strand 7	G	236	239	parallel
Strand 8	G	467	469	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	290	291	first strand
Strand 2	G	295	297	anti-parallel
Strand 3	H	298	300	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	415	416	first strand
Strand 2	G	422	424	anti-parallel
Strand 3	G	456	458	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DAR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DAR