Analysis of interatomic Contacts of Structural Units in PDB entry:
8DAU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DAU entry

There are 11 chains in PDB entry 8DAU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 33	ALA 786
B	LYS 21	ALA 786
C	GLY 71	ALA 786
D	GLY 71	ALA 786
E	ASN 207	ALA 786
F	LYS 72	ALA 786
G	HIS 106	GLY 580
H	LEU 228	ASP 311
I	ILE 13	LEU 50
J	MET 101	GLY 176
K	MET 201	GLY 276

There are208 helices in PDB entry 8DAU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	60	Right-handed alpha
Helix 2	AA2	A	95	103	Right-handed alpha
Helix 3	AA3	A	129	133	Right-handed 310
Helix 4	AA4	A	140	149	Right-handed alpha
Helix 5	AA5	A	201	207	Right-handed alpha
Helix 6	AA6	A	212	216	Right-handed 310
Helix 7	AA7	A	219	236	Right-handed alpha
Helix 8	AA8	A	237	244	Right-handed alpha
Helix 9	AA9	A	260	273	Right-handed alpha
Helix 10	AB1	A	281	286	Right-handed alpha
Helix 11	AB2	A	290	306	Right-handed alpha
Helix 12	AB3	A	315	320	Right-handed alpha
Helix 13	AB4	A	328	345	Right-handed alpha
Helix 14	AB5	A	364	369	Right-handed 310
Helix 15	AB6	A	383	395	Right-handed alpha
Helix 16	AB7	A	405	413	Right-handed alpha
Helix 17	AB8	A	417	438	Right-handed alpha
Helix 18	AB9	A	448	455	Right-handed alpha
Helix 19	AC1	A	458	468	Right-handed alpha
Helix 20	AC2	A	472	476	Right-handed 310
Helix 21	AC3	A	485	489	Right-handed 310
Helix 22	AC4	A	492	509	Right-handed alpha
Helix 23	AC5	A	509	517	Right-handed alpha
Helix 24	AC6	A	534	545	Right-handed alpha
Helix 25	AC7	A	553	563	Right-handed alpha
Helix 26	AC8	A	568	579	Right-handed alpha
Helix 27	AC9	A	588	593	Right-handed 310
Helix 28	AD1	A	608	621	Right-handed alpha
Helix 29	AD2	A	640	645	Right-handed 310
Helix 30	AD3	A	659	671	Right-handed alpha
Helix 31	AD4	A	682	689	Right-handed alpha
Helix 32	AD5	A	693	718	Right-handed alpha
Helix 33	AD6	A	754	764	Right-handed alpha
Helix 34	AD7	A	770	786	Right-handed alpha
Helix 35	AD8	B	52	60	Right-handed alpha
Helix 36	AD9	B	95	103	Right-handed alpha
Helix 37	AE1	B	130	134	Right-handed 310
Helix 38	AE2	B	139	150	Right-handed alpha
Helix 39	AE3	B	202	206	Right-handed 310
Helix 40	AE4	B	212	216	Right-handed 310
Helix 41	AE5	B	219	236	Right-handed alpha
Helix 42	AE6	B	237	244	Right-handed alpha
Helix 43	AE7	B	260	273	Right-handed alpha
Helix 44	AE8	B	282	285	Right-handed 310
Helix 45	AE9	B	291	306	Right-handed alpha
Helix 46	AF1	B	315	320	Right-handed 310
Helix 47	AF2	B	322	326	Right-handed 310
Helix 48	AF3	B	329	345	Right-handed alpha
Helix 49	AF4	B	364	368	Right-handed 310
Helix 50	AF5	B	383	395	Right-handed alpha
Helix 51	AF6	B	405	412	Right-handed alpha
Helix 52	AF7	B	417	438	Right-handed alpha
Helix 53	AF8	B	448	455	Right-handed alpha
Helix 54	AF9	B	458	469	Right-handed alpha
Helix 55	AG1	B	472	476	Right-handed 310
Helix 56	AG2	B	492	509	Right-handed alpha
Helix 57	AG3	B	509	517	Right-handed alpha
Helix 58	AG4	B	535	545	Right-handed alpha
Helix 59	AG5	B	553	563	Right-handed alpha
Helix 60	AG6	B	568	579	Right-handed alpha
Helix 61	AG7	B	589	593	Right-handed 310
Helix 62	AG8	B	608	621	Right-handed alpha
Helix 63	AG9	B	635	639	Right-handed 310
Helix 64	AH1	B	640	645	Right-handed 310
Helix 65	AH2	B	659	670	Right-handed alpha
Helix 66	AH3	B	682	689	Right-handed alpha
Helix 67	AH4	B	693	718	Right-handed alpha
Helix 68	AH5	B	754	764	Right-handed alpha
Helix 69	AH6	B	770	786	Right-handed alpha
Helix 70	AH7	C	95	103	Right-handed alpha
Helix 71	AH8	C	212	216	Right-handed 310
Helix 72	AH9	C	219	236	Right-handed alpha
Helix 73	AI1	C	236	244	Right-handed alpha
Helix 74	AI2	C	260	273	Right-handed alpha
Helix 75	AI3	C	281	285	Right-handed 310
Helix 76	AI4	C	290	305	Right-handed alpha
Helix 77	AI5	C	315	320	Right-handed alpha
Helix 78	AI6	C	329	344	Right-handed alpha
Helix 79	AI7	C	359	363	Right-handed 310
Helix 80	AI8	C	364	369	Right-handed 310
Helix 81	AI9	C	383	395	Right-handed alpha
Helix 82	AJ1	C	405	413	Right-handed alpha
Helix 83	AJ2	C	417	437	Right-handed alpha
Helix 84	AJ3	C	438	440	Right-handed 310
Helix 85	AJ4	C	448	455	Right-handed alpha
Helix 86	AJ5	C	458	469	Right-handed alpha
Helix 87	AJ6	C	492	509	Right-handed alpha
Helix 88	AJ7	C	509	517	Right-handed alpha
Helix 89	AJ8	C	533	546	Right-handed alpha
Helix 90	AJ9	C	553	562	Right-handed alpha
Helix 91	AK1	C	568	579	Right-handed alpha
Helix 92	AK2	C	608	619	Right-handed alpha
Helix 93	AK3	C	640	645	Right-handed alpha
Helix 94	AK4	C	659	671	Right-handed alpha
Helix 95	AK5	C	682	689	Right-handed alpha
Helix 96	AK6	C	693	718	Right-handed alpha
Helix 97	AK7	C	754	765	Right-handed alpha
Helix 98	AK8	C	770	786	Right-handed alpha
Helix 99	AK9	D	98	103	Right-handed alpha
Helix 100	AL1	D	212	216	Right-handed 310
Helix 101	AL2	D	219	236	Right-handed alpha
Helix 102	AL3	D	236	244	Right-handed alpha
Helix 103	AL4	D	260	273	Right-handed alpha
Helix 104	AL5	D	281	286	Right-handed alpha
Helix 105	AL6	D	288	306	Right-handed alpha
Helix 106	AL7	D	315	320	Right-handed alpha
Helix 107	AL8	D	328	345	Right-handed alpha
Helix 108	AL9	D	364	369	Right-handed 310
Helix 109	AM1	D	383	395	Right-handed alpha
Helix 110	AM2	D	405	413	Right-handed alpha
Helix 111	AM3	D	417	438	Right-handed alpha
Helix 112	AM4	D	448	455	Right-handed alpha
Helix 113	AM5	D	458	468	Right-handed alpha
Helix 114	AM6	D	472	476	Right-handed 310
Helix 115	AM7	D	485	489	Right-handed 310
Helix 116	AM8	D	492	509	Right-handed alpha
Helix 117	AM9	D	509	517	Right-handed alpha
Helix 118	AN1	D	533	545	Right-handed alpha
Helix 119	AN2	D	554	563	Right-handed alpha
Helix 120	AN3	D	568	579	Right-handed alpha
Helix 121	AN4	D	588	593	Right-handed 310
Helix 122	AN5	D	608	620	Right-handed alpha
Helix 123	AN6	D	640	644	Right-handed 310
Helix 124	AN7	D	659	671	Right-handed alpha
Helix 125	AN8	D	682	689	Right-handed alpha
Helix 126	AN9	D	693	718	Right-handed alpha
Helix 127	AO1	D	754	765	Right-handed alpha
Helix 128	AO2	D	770	786	Right-handed alpha
Helix 129	AO3	E	212	216	Right-handed 310
Helix 130	AO4	E	219	236	Right-handed alpha
Helix 131	AO5	E	237	244	Right-handed alpha
Helix 132	AO6	E	260	273	Right-handed alpha
Helix 133	AO7	E	280	288	Right-handed alpha
Helix 134	AO8	E	290	306	Right-handed alpha
Helix 135	AO9	E	315	320	Right-handed alpha
Helix 136	AP1	E	330	345	Right-handed alpha
Helix 137	AP2	E	364	369	Right-handed 310
Helix 138	AP3	E	383	395	Right-handed alpha
Helix 139	AP4	E	405	413	Right-handed alpha
Helix 140	AP5	E	417	437	Right-handed alpha
Helix 141	AP6	E	438	440	Right-handed 310
Helix 142	AP7	E	448	455	Right-handed alpha
Helix 143	AP8	E	458	468	Right-handed alpha
Helix 144	AP9	E	485	489	Right-handed 310
Helix 145	AQ1	E	492	509	Right-handed alpha
Helix 146	AQ2	E	509	516	Right-handed alpha
Helix 147	AQ3	E	535	545	Right-handed alpha
Helix 148	AQ4	E	553	563	Right-handed alpha
Helix 149	AQ5	E	568	579	Right-handed alpha
Helix 150	AQ6	E	588	593	Right-handed 310
Helix 151	AQ7	E	608	620	Right-handed alpha
Helix 152	AQ8	E	635	639	Right-handed 310
Helix 153	AQ9	E	640	645	Right-handed 310
Helix 154	AR1	E	659	672	Right-handed alpha
Helix 155	AR2	E	681	689	Right-handed alpha
Helix 156	AR3	E	693	718	Right-handed alpha
Helix 157	AR4	E	754	764	Right-handed alpha
Helix 158	AR5	E	770	786	Right-handed alpha
Helix 159	AR6	F	97	102	Right-handed alpha
Helix 160	AR7	F	202	207	Right-handed alpha
Helix 161	AR8	F	212	216	Right-handed 310
Helix 162	AR9	F	219	236	Right-handed alpha
Helix 163	AS1	F	236	244	Right-handed alpha
Helix 164	AS2	F	260	273	Right-handed alpha
Helix 165	AS3	F	280	287	Right-handed alpha
Helix 166	AS4	F	290	306	Right-handed alpha
Helix 167	AS5	F	315	320	Right-handed alpha
Helix 168	AS6	F	328	344	Right-handed alpha
Helix 169	AS7	F	364	369	Right-handed 310
Helix 170	AS8	F	383	395	Right-handed alpha
Helix 171	AS9	F	405	413	Right-handed alpha
Helix 172	AT1	F	417	438	Right-handed alpha
Helix 173	AT2	F	448	454	Right-handed alpha
Helix 174	AT3	F	458	469	Right-handed alpha
Helix 175	AT4	F	485	489	Right-handed 310
Helix 176	AT5	F	492	509	Right-handed alpha
Helix 177	AT6	F	509	517	Right-handed alpha
Helix 178	AT7	F	533	545	Right-handed alpha
Helix 179	AT8	F	553	563	Right-handed alpha
Helix 180	AT9	F	568	579	Right-handed alpha
Helix 181	AU1	F	588	593	Right-handed 310
Helix 182	AU2	F	608	621	Right-handed alpha
Helix 183	AU3	F	640	645	Right-handed 310
Helix 184	AU4	F	659	671	Right-handed alpha
Helix 185	AU5	F	672	674	Right-handed 310
Helix 186	AU6	F	682	688	Right-handed alpha
Helix 187	AU7	F	693	718	Right-handed alpha
Helix 188	AU8	F	754	764	Right-handed alpha
Helix 189	AU9	F	770	786	Right-handed alpha
Helix 190	AV1	G	116	124	Right-handed alpha
Helix 191	AV2	G	155	162	Right-handed alpha
Helix 192	AV3	G	167	181	Right-handed alpha
Helix 193	AV4	G	241	254	Right-handed alpha
Helix 194	AV5	G	299	318	Right-handed alpha
Helix 195	AV6	G	351	364	Right-handed alpha
Helix 196	AV7	G	402	412	Right-handed alpha
Helix 197	AV8	G	500	513	Right-handed alpha
Helix 198	AV9	G	516	524	Right-handed alpha
Helix 199	AW1	G	526	537	Right-handed alpha
Helix 200	AW2	G	540	553	Right-handed alpha
Helix 201	AW3	G	555	566	Right-handed alpha
Helix 202	AW4	G	566	579	Right-handed alpha
Helix 203	AW5	H	243	254	Right-handed alpha
Helix 204	AW6	I	22	31	Right-handed alpha
Helix 205	AW7	J	122	135	Right-handed alpha
Helix 206	AW8	J	155	160	Right-handed alpha
Helix 207	AW9	K	222	235	Right-handed alpha
Helix 208	AX1	K	237	239	Right-handed 310

There are 24 sheets in PDB entry 8DAU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	37	first strand
Strand 2	A	109	114	anti-parallel
Strand 3	A	66	70	anti-parallel
Strand 4	A	76	83	anti-parallel
Strand 5	A	48	51	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	166	first strand
Strand 2	A	169	179	anti-parallel
Strand 3	A	123	127	anti-parallel
Strand 4	A	191	193	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	185	186	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	280	first strand
Strand 2	A	309	314	parallel
Strand 3	A	351	357	parallel
Strand 4	A	250	254	parallel
Strand 5	A	373	378	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	548	552	first strand
Strand 2	A	582	586	parallel
Strand 3	A	627	633	parallel
Strand 4	A	523	527	parallel
Strand 5	A	649	654	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	36	first strand
Strand 2	B	110	114	anti-parallel
Strand 3	B	67	70	anti-parallel
Strand 4	B	76	83	anti-parallel
Strand 5	B	48	51	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	120	first strand
Strand 2	B	183	185	parallel
Strand 3	B	156	157	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	166	first strand
Strand 2	B	169	179	anti-parallel
Strand 3	B	123	128	anti-parallel
Strand 4	B	191	193	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	280	first strand
Strand 2	B	309	314	parallel
Strand 3	B	351	356	parallel
Strand 4	B	250	254	parallel
Strand 5	B	375	378	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	548	552	first strand
Strand 2	B	582	587	parallel
Strand 3	B	629	632	parallel
Strand 4	B	523	527	parallel
Strand 5	B	651	654	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	278	first strand
Strand 2	C	309	312	parallel
Strand 3	C	351	357	parallel
Strand 4	C	251	254	parallel
Strand 5	C	375	378	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	524	527	first strand
Strand 2	C	651	654	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	551	552	first strand
Strand 2	C	583	586	parallel
Strand 3	C	628	629	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	275	279	first strand
Strand 2	D	309	313	parallel
Strand 3	D	351	357	parallel
Strand 4	D	250	254	parallel
Strand 5	D	375	378	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	548	553	first strand
Strand 2	D	582	587	parallel
Strand 3	D	628	632	parallel
Strand 4	D	524	527	parallel
Strand 5	D	651	654	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	275	279	first strand
Strand 2	E	309	313	parallel
Strand 3	E	351	355	parallel
Strand 4	E	250	254	parallel
Strand 5	E	375	378	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	548	552	first strand
Strand 2	E	582	586	parallel
Strand 3	E	627	632	parallel
Strand 4	E	523	527	parallel
Strand 5	E	651	654	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	275	278	first strand
Strand 2	F	308	312	parallel
Strand 3	F	350	357	parallel
Strand 4	F	250	254	parallel
Strand 5	F	375	378	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	548	552	first strand
Strand 2	F	582	586	parallel
Strand 3	F	627	633	parallel
Strand 4	F	523	527	parallel
Strand 5	F	651	654	parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	463	465	first strand
Strand 2	G	396	401	anti-parallel
Strand 3	G	382	386	anti-parallel
Strand 4	G	323	327	parallel
Strand 5	G	259	270	anti-parallel
Strand 6	G	276	285	anti-parallel
Strand 7	G	236	239	parallel
Strand 8	G	467	471	parallel
Strand 9	I	40	41	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	422	424	first strand
Strand 2	G	456	458	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	441	442	first strand
Strand 2	G	448	449	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	113	116	first strand
Strand 2	J	102	106	anti-parallel
Strand 3	J	166	171	parallel
Strand 4	J	141	144	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	212	215	first strand
Strand 2	K	203	206	anti-parallel
Strand 3	K	266	271	parallel
Strand 4	K	241	245	anti-parallel
Strand 5	K	248	249	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DAU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DAU