Analysis of interatomic Contacts of Structural Units in PDB entry:
8DAV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DAV entry

There are 11 chains in PDB entry 8DAV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 33	ALA 786
B	LYS 21	ALA 786
C	GLY 71	ALA 786
D	GLY 71	ALA 786
E	ASN 207	ALA 786
F	LYS 72	ALA 786
G	HIS 106	GLY 580
H	LEU 228	ASP 311
I	ILE 13	LEU 50
J	MET 101	GLY 176
K	MET 201	GLY 276

There are209 helices in PDB entry 8DAV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	60	Right-handed alpha
Helix 2	AA2	A	95	103	Right-handed alpha
Helix 3	AA3	A	129	134	Right-handed 310
Helix 4	AA4	A	140	149	Right-handed alpha
Helix 5	AA5	A	201	207	Right-handed alpha
Helix 6	AA6	A	212	216	Right-handed 310
Helix 7	AA7	A	219	236	Right-handed alpha
Helix 8	AA8	A	237	244	Right-handed alpha
Helix 9	AA9	A	260	273	Right-handed alpha
Helix 10	AB1	A	281	286	Right-handed alpha
Helix 11	AB2	A	290	306	Right-handed alpha
Helix 12	AB3	A	315	320	Right-handed alpha
Helix 13	AB4	A	328	344	Right-handed alpha
Helix 14	AB5	A	364	369	Right-handed 310
Helix 15	AB6	A	383	395	Right-handed alpha
Helix 16	AB7	A	405	413	Right-handed alpha
Helix 17	AB8	A	417	438	Right-handed alpha
Helix 18	AB9	A	448	454	Right-handed alpha
Helix 19	AC1	A	458	468	Right-handed alpha
Helix 20	AC2	A	472	476	Right-handed 310
Helix 21	AC3	A	485	489	Right-handed 310
Helix 22	AC4	A	492	509	Right-handed alpha
Helix 23	AC5	A	509	517	Right-handed alpha
Helix 24	AC6	A	533	545	Right-handed alpha
Helix 25	AC7	A	553	563	Right-handed alpha
Helix 26	AC8	A	568	579	Right-handed alpha
Helix 27	AC9	A	588	593	Right-handed 310
Helix 28	AD1	A	608	621	Right-handed alpha
Helix 29	AD2	A	640	645	Right-handed 310
Helix 30	AD3	A	659	671	Right-handed alpha
Helix 31	AD4	A	682	689	Right-handed alpha
Helix 32	AD5	A	693	718	Right-handed alpha
Helix 33	AD6	A	754	764	Right-handed alpha
Helix 34	AD7	A	770	786	Right-handed alpha
Helix 35	AD8	B	52	60	Right-handed alpha
Helix 36	AD9	B	95	103	Right-handed alpha
Helix 37	AE1	B	130	134	Right-handed 310
Helix 38	AE2	B	139	150	Right-handed alpha
Helix 39	AE3	B	202	206	Right-handed 310
Helix 40	AE4	B	212	216	Right-handed 310
Helix 41	AE5	B	219	231	Right-handed alpha
Helix 42	AE6	B	236	244	Right-handed alpha
Helix 43	AE7	B	260	273	Right-handed alpha
Helix 44	AE8	B	280	285	Right-handed 310
Helix 45	AE9	B	291	306	Right-handed alpha
Helix 46	AF1	B	315	319	Right-handed 310
Helix 47	AF2	B	329	345	Right-handed alpha
Helix 48	AF3	B	364	368	Right-handed 310
Helix 49	AF4	B	383	395	Right-handed alpha
Helix 50	AF5	B	405	412	Right-handed alpha
Helix 51	AF6	B	417	437	Right-handed alpha
Helix 52	AF7	B	438	440	Right-handed 310
Helix 53	AF8	B	448	455	Right-handed alpha
Helix 54	AF9	B	458	469	Right-handed alpha
Helix 55	AG1	B	472	476	Right-handed 310
Helix 56	AG2	B	492	509	Right-handed alpha
Helix 57	AG3	B	509	517	Right-handed alpha
Helix 58	AG4	B	533	545	Right-handed alpha
Helix 59	AG5	B	553	563	Right-handed alpha
Helix 60	AG6	B	568	579	Right-handed alpha
Helix 61	AG7	B	588	593	Right-handed 310
Helix 62	AG8	B	608	621	Right-handed alpha
Helix 63	AG9	B	635	639	Right-handed 310
Helix 64	AH1	B	640	645	Right-handed 310
Helix 65	AH2	B	659	671	Right-handed alpha
Helix 66	AH3	B	682	689	Right-handed alpha
Helix 67	AH4	B	693	718	Right-handed alpha
Helix 68	AH5	B	754	764	Right-handed alpha
Helix 69	AH6	B	770	786	Right-handed alpha
Helix 70	AH7	C	95	103	Right-handed alpha
Helix 71	AH8	C	212	216	Right-handed 310
Helix 72	AH9	C	219	236	Right-handed alpha
Helix 73	AI1	C	237	244	Right-handed alpha
Helix 74	AI2	C	260	273	Right-handed alpha
Helix 75	AI3	C	281	285	Right-handed 310
Helix 76	AI4	C	290	305	Right-handed alpha
Helix 77	AI5	C	315	320	Right-handed alpha
Helix 78	AI6	C	329	344	Right-handed alpha
Helix 79	AI7	C	359	363	Right-handed 310
Helix 80	AI8	C	364	369	Right-handed 310
Helix 81	AI9	C	383	395	Right-handed alpha
Helix 82	AJ1	C	405	413	Right-handed alpha
Helix 83	AJ2	C	417	437	Right-handed alpha
Helix 84	AJ3	C	448	454	Right-handed alpha
Helix 85	AJ4	C	458	469	Right-handed alpha
Helix 86	AJ5	C	485	489	Right-handed 310
Helix 87	AJ6	C	492	503	Right-handed alpha
Helix 88	AJ7	C	503	509	Right-handed alpha
Helix 89	AJ8	C	509	517	Right-handed alpha
Helix 90	AJ9	C	533	545	Right-handed alpha
Helix 91	AK1	C	553	563	Right-handed alpha
Helix 92	AK2	C	568	579	Right-handed alpha
Helix 93	AK3	C	608	619	Right-handed alpha
Helix 94	AK4	C	640	645	Right-handed alpha
Helix 95	AK5	C	659	671	Right-handed alpha
Helix 96	AK6	C	682	689	Right-handed alpha
Helix 97	AK7	C	693	718	Right-handed alpha
Helix 98	AK8	C	754	765	Right-handed alpha
Helix 99	AK9	C	770	786	Right-handed alpha
Helix 100	AL1	D	98	103	Right-handed alpha
Helix 101	AL2	D	212	216	Right-handed 310
Helix 102	AL3	D	219	236	Right-handed alpha
Helix 103	AL4	D	236	244	Right-handed alpha
Helix 104	AL5	D	260	273	Right-handed alpha
Helix 105	AL6	D	281	286	Right-handed alpha
Helix 106	AL7	D	288	306	Right-handed alpha
Helix 107	AL8	D	315	320	Right-handed alpha
Helix 108	AL9	D	328	345	Right-handed alpha
Helix 109	AM1	D	364	369	Right-handed 310
Helix 110	AM2	D	383	395	Right-handed alpha
Helix 111	AM3	D	405	413	Right-handed alpha
Helix 112	AM4	D	417	437	Right-handed alpha
Helix 113	AM5	D	448	455	Right-handed alpha
Helix 114	AM6	D	458	468	Right-handed alpha
Helix 115	AM7	D	472	476	Right-handed 310
Helix 116	AM8	D	485	489	Right-handed 310
Helix 117	AM9	D	492	509	Right-handed alpha
Helix 118	AN1	D	509	517	Right-handed alpha
Helix 119	AN2	D	533	545	Right-handed alpha
Helix 120	AN3	D	554	563	Right-handed alpha
Helix 121	AN4	D	568	579	Right-handed alpha
Helix 122	AN5	D	588	592	Right-handed 310
Helix 123	AN6	D	608	620	Right-handed alpha
Helix 124	AN7	D	659	671	Right-handed alpha
Helix 125	AN8	D	682	689	Right-handed alpha
Helix 126	AN9	D	693	718	Right-handed alpha
Helix 127	AO1	D	754	765	Right-handed alpha
Helix 128	AO2	D	770	786	Right-handed alpha
Helix 129	AO3	E	212	216	Right-handed 310
Helix 130	AO4	E	219	236	Right-handed alpha
Helix 131	AO5	E	237	244	Right-handed alpha
Helix 132	AO6	E	260	273	Right-handed alpha
Helix 133	AO7	E	280	288	Right-handed alpha
Helix 134	AO8	E	290	306	Right-handed alpha
Helix 135	AO9	E	329	345	Right-handed alpha
Helix 136	AP1	E	364	369	Right-handed 310
Helix 137	AP2	E	383	395	Right-handed alpha
Helix 138	AP3	E	405	413	Right-handed alpha
Helix 139	AP4	E	417	437	Right-handed alpha
Helix 140	AP5	E	448	455	Right-handed alpha
Helix 141	AP6	E	458	468	Right-handed alpha
Helix 142	AP7	E	485	489	Right-handed 310
Helix 143	AP8	E	492	509	Right-handed alpha
Helix 144	AP9	E	509	516	Right-handed alpha
Helix 145	AQ1	E	535	546	Right-handed alpha
Helix 146	AQ2	E	553	563	Right-handed alpha
Helix 147	AQ3	E	568	579	Right-handed alpha
Helix 148	AQ4	E	588	593	Right-handed 310
Helix 149	AQ5	E	608	620	Right-handed alpha
Helix 150	AQ6	E	640	645	Right-handed 310
Helix 151	AQ7	E	659	672	Right-handed alpha
Helix 152	AQ8	E	681	688	Right-handed alpha
Helix 153	AQ9	E	693	718	Right-handed alpha
Helix 154	AR1	E	754	764	Right-handed alpha
Helix 155	AR2	E	770	786	Right-handed alpha
Helix 156	AR3	F	97	102	Right-handed alpha
Helix 157	AR4	F	202	206	Right-handed alpha
Helix 158	AR5	F	212	216	Right-handed 310
Helix 159	AR6	F	219	236	Right-handed alpha
Helix 160	AR7	F	236	244	Right-handed alpha
Helix 161	AR8	F	260	273	Right-handed alpha
Helix 162	AR9	F	280	287	Right-handed alpha
Helix 163	AS1	F	288	306	Right-handed alpha
Helix 164	AS2	F	315	320	Right-handed alpha
Helix 165	AS3	F	328	344	Right-handed alpha
Helix 166	AS4	F	364	369	Right-handed 310
Helix 167	AS5	F	383	395	Right-handed alpha
Helix 168	AS6	F	405	413	Right-handed alpha
Helix 169	AS7	F	417	438	Right-handed alpha
Helix 170	AS8	F	448	454	Right-handed alpha
Helix 171	AS9	F	458	469	Right-handed alpha
Helix 172	AT1	F	485	489	Right-handed 310
Helix 173	AT2	F	492	509	Right-handed alpha
Helix 174	AT3	F	509	517	Right-handed alpha
Helix 175	AT4	F	533	545	Right-handed alpha
Helix 176	AT5	F	553	563	Right-handed alpha
Helix 177	AT6	F	568	579	Right-handed alpha
Helix 178	AT7	F	589	593	Right-handed 310
Helix 179	AT8	F	608	621	Right-handed alpha
Helix 180	AT9	F	635	639	Right-handed 310
Helix 181	AU1	F	640	645	Right-handed 310
Helix 182	AU2	F	659	671	Right-handed alpha
Helix 183	AU3	F	682	688	Right-handed alpha
Helix 184	AU4	F	693	718	Right-handed alpha
Helix 185	AU5	F	754	764	Right-handed alpha
Helix 186	AU6	F	770	786	Right-handed alpha
Helix 187	AU7	G	116	124	Right-handed alpha
Helix 188	AU8	G	155	163	Right-handed alpha
Helix 189	AU9	G	168	181	Right-handed alpha
Helix 190	AV1	G	210	214	Right-handed 310
Helix 191	AV2	G	241	256	Right-handed alpha
Helix 192	AV3	G	299	318	Right-handed alpha
Helix 193	AV4	G	351	365	Right-handed alpha
Helix 194	AV5	G	402	409	Right-handed alpha
Helix 195	AV6	G	500	513	Right-handed alpha
Helix 196	AV7	G	516	524	Right-handed alpha
Helix 197	AV8	G	526	537	Right-handed alpha
Helix 198	AV9	G	540	553	Right-handed alpha
Helix 199	AW1	G	555	565	Right-handed alpha
Helix 200	AW2	G	566	579	Right-handed alpha
Helix 201	AW3	H	229	234	Right-handed 310
Helix 202	AW4	H	243	254	Right-handed alpha
Helix 203	AW5	H	255	257	Right-handed 310
Helix 204	AW6	I	22	31	Right-handed alpha
Helix 205	AW7	J	122	135	Right-handed alpha
Helix 206	AW8	J	155	160	Right-handed 310
Helix 207	AW9	K	222	235	Right-handed alpha
Helix 208	AX1	K	237	241	Right-handed 310
Helix 209	AX2	K	255	260	Right-handed alpha

There are 25 sheets in PDB entry 8DAV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	37	first strand
Strand 2	A	109	113	anti-parallel
Strand 3	A	66	70	anti-parallel
Strand 4	A	76	83	anti-parallel
Strand 5	A	48	51	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	166	first strand
Strand 2	A	169	179	anti-parallel
Strand 3	A	120	127	anti-parallel
Strand 4	A	185	193	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	280	first strand
Strand 2	A	309	314	parallel
Strand 3	A	351	357	parallel
Strand 4	A	250	254	parallel
Strand 5	A	375	378	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	548	552	first strand
Strand 2	A	582	586	parallel
Strand 3	A	627	633	parallel
Strand 4	A	523	527	parallel
Strand 5	A	651	654	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	51	first strand
Strand 2	B	76	83	parallel
Strand 3	B	67	70	anti-parallel
Strand 4	B	111	114	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	120	first strand
Strand 2	B	183	185	parallel
Strand 3	B	155	157	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	166	first strand
Strand 2	B	169	179	anti-parallel
Strand 3	B	123	128	anti-parallel
Strand 4	B	191	193	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	309	313	parallel
Strand 3	B	351	357	parallel
Strand 4	B	250	254	parallel
Strand 5	B	375	378	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	548	552	first strand
Strand 2	B	582	586	parallel
Strand 3	B	629	632	parallel
Strand 4	B	524	527	parallel
Strand 5	B	651	654	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	278	first strand
Strand 2	C	309	312	parallel
Strand 3	C	351	357	parallel
Strand 4	C	251	254	parallel
Strand 5	C	375	378	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	524	527	first strand
Strand 2	C	651	654	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	551	552	first strand
Strand 2	C	583	586	parallel
Strand 3	C	628	629	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	275	279	first strand
Strand 2	D	309	313	parallel
Strand 3	D	351	357	parallel
Strand 4	D	250	254	parallel
Strand 5	D	375	378	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	548	553	first strand
Strand 2	D	582	587	parallel
Strand 3	D	627	632	parallel
Strand 4	D	524	527	parallel
Strand 5	D	651	654	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	275	279	first strand
Strand 2	E	309	313	parallel
Strand 3	E	351	357	parallel
Strand 4	E	250	254	parallel
Strand 5	E	375	378	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	548	552	first strand
Strand 2	E	582	586	parallel
Strand 3	E	627	632	parallel
Strand 4	E	523	527	parallel
Strand 5	E	651	654	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	275	278	first strand
Strand 2	F	308	312	parallel
Strand 3	F	350	357	parallel
Strand 4	F	251	254	parallel
Strand 5	F	375	378	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	548	552	first strand
Strand 2	F	582	587	parallel
Strand 3	F	627	633	parallel
Strand 4	F	523	527	parallel
Strand 5	F	651	654	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	236	239	first strand
Strand 2	G	276	285	parallel
Strand 3	G	260	270	anti-parallel
Strand 4	G	320	327	anti-parallel
Strand 5	G	382	386	parallel
Strand 6	G	396	401	anti-parallel
Strand 7	G	463	465	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	290	291	first strand
Strand 2	G	296	297	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	422	424	first strand
Strand 2	G	456	458	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	441	442	first strand
Strand 2	G	448	449	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	470	471	first strand
Strand 2	I	40	41	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	112	116	first strand
Strand 2	J	102	107	anti-parallel
Strand 3	J	166	171	parallel
Strand 4	J	141	145	anti-parallel
Strand 5	J	148	149	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	212	215	first strand
Strand 2	K	203	206	anti-parallel
Strand 3	K	266	270	parallel
Strand 4	K	242	245	anti-parallel
Strand 5	K	248	249	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DAV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DAV