Analysis of interatomic Contacts of Structural Units in PDB entry:
8DAX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DAX entry

There are 2 chains in PDB entry 8DAX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 248
B
 MET 1GLU 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8DAX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 16Right-handed alpha
Helix 2
AA2
A
36 38Right-handed 310
Helix 3
AA3
A
64 69Right-handed alpha
Helix 4
AA4
A
70 72Right-handed 310
Helix 5
AA5
A
74 76Right-handed 310
Helix 6
AA6
A
129 134Right-handed alpha
Helix 7
AA7
A
185 189Right-handed 310
Helix 8
AA8
A
224 228Right-handed 310
Helix 9
AA9
A
236 247Right-handed alpha
Helix 10
AB1
B
5 16Right-handed alpha
Helix 11
AB2
B
36 38Right-handed 310
Helix 12
AB3
B
64 69Right-handed alpha
Helix 13
AB4
B
70 72Right-handed 310
Helix 14
AB5
B
74 76Right-handed 310
Helix 15
AB6
B
110 114Right-handed 310
Helix 16
AB7
B
129 134Right-handed alpha
Helix 17
AB8
B
185 189Right-handed 310
Helix 18
AB9
B
236 247Right-handed alpha
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There are 7 sheets in PDB entry 8DAX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
A
165 174anti-parallel
Strand 3
A
179 181anti-parallel
Strand 4
A
213 218anti-parallel
Strand 5
A
200 208anti-parallel
Strand 6
A
192 194anti-parallel
Strand 7
A
150 155anti-parallel
Strand 8
A
165 174anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 45first strand
Strand 2
A
49 57anti-parallel
Strand 3
A
60 63anti-parallel
Strand 4
A
117 121anti-parallel
Strand 5
A
100 106anti-parallel
Strand 6
A
78 82anti-parallel
Strand 7
A
40 45anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
93 94anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
234 235anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
166 174anti-parallel
Strand 3
B
179 181anti-parallel
Strand 4
B
213 218anti-parallel
Strand 5
B
200 208anti-parallel
Strand 6
B
192 194anti-parallel
Strand 7
B
150 155anti-parallel
Strand 8
B
166 174anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 45first strand
Strand 2
B
49 55anti-parallel
Strand 3
B
60 63anti-parallel
Strand 4
B
117 121anti-parallel
Strand 5
B
100 106anti-parallel
Strand 6
B
78 82anti-parallel
Strand 7
B
40 45anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 223first strand
Strand 2
B
234 235anti-parallel
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