Analysis of interatomic Contacts of Structural Units in PDB entry:
8DB0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DB0 entry

There are 4 chains in PDB entry 8DB0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 11	GLN 414
B	SER 11	ALA 412
C	SER 11	ALA 412
D	SER 11	LEU 130

There are 58 helices in PDB entry 8DB0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	20	Right-handed alpha
Helix 2	AA2	A	24	45	Right-handed alpha
Helix 3	AA3	A	48	63	Right-handed alpha
Helix 4	AA4	A	64	67	Right-handed 310
Helix 5	AA5	A	96	100	Right-handed 310
Helix 6	AA6	A	124	138	Right-handed alpha
Helix 7	AA7	A	143	155	Right-handed alpha
Helix 8	AA8	A	199	210	Right-handed alpha
Helix 9	AA9	A	216	229	Right-handed alpha
Helix 10	AB1	A	231	235	Right-handed 310
Helix 11	AB2	A	262	271	Right-handed alpha
Helix 12	AB3	A	279	295	Right-handed alpha
Helix 13	AB4	A	336	341	Right-handed alpha
Helix 14	AB5	A	343	358	Right-handed alpha
Helix 15	AB6	A	363	375	Right-handed alpha
Helix 16	AB7	B	12	20	Right-handed alpha
Helix 17	AB8	B	24	45	Right-handed alpha
Helix 18	AB9	B	48	63	Right-handed alpha
Helix 19	AC1	B	64	67	Right-handed 310
Helix 20	AC2	B	96	100	Right-handed 310
Helix 21	AC3	B	124	138	Right-handed alpha
Helix 22	AC4	B	143	154	Right-handed alpha
Helix 23	AC5	B	199	210	Right-handed alpha
Helix 24	AC6	B	216	229	Right-handed alpha
Helix 25	AC7	B	231	235	Right-handed 310
Helix 26	AC8	B	262	272	Right-handed alpha
Helix 27	AC9	B	279	295	Right-handed alpha
Helix 28	AD1	B	337	341	Right-handed alpha
Helix 29	AD2	B	343	358	Right-handed alpha
Helix 30	AD3	B	363	375	Right-handed alpha
Helix 31	AD4	C	12	20	Right-handed alpha
Helix 32	AD5	C	24	45	Right-handed alpha
Helix 33	AD6	C	48	63	Right-handed alpha
Helix 34	AD7	C	64	67	Right-handed 310
Helix 35	AD8	C	124	138	Right-handed alpha
Helix 36	AD9	C	143	154	Right-handed alpha
Helix 37	AE1	C	199	210	Right-handed alpha
Helix 38	AE2	C	217	228	Right-handed alpha
Helix 39	AE3	C	231	233	Right-handed 310
Helix 40	AE4	C	262	271	Right-handed alpha
Helix 41	AE5	C	279	295	Right-handed alpha
Helix 42	AE6	C	337	341	Right-handed alpha
Helix 43	AE7	C	343	358	Right-handed alpha
Helix 44	AE8	C	363	375	Right-handed alpha
Helix 45	AE9	D	12	20	Right-handed alpha
Helix 46	AF1	D	24	45	Right-handed alpha
Helix 47	AF2	D	48	63	Right-handed alpha
Helix 48	AF3	D	64	67	Right-handed 310
Helix 49	AF4	D	124	138	Right-handed alpha
Helix 50	AF5	D	143	154	Right-handed alpha
Helix 51	AF6	D	199	210	Right-handed alpha
Helix 52	AF7	D	217	228	Right-handed alpha
Helix 53	AF8	D	231	233	Right-handed 310
Helix 54	AF9	D	262	271	Right-handed alpha
Helix 55	AG1	D	279	295	Right-handed alpha
Helix 56	AG2	D	336	341	Right-handed alpha
Helix 57	AG3	D	343	358	Right-handed alpha
Helix 58	AG4	D	363	375	Right-handed alpha

There are 4 sheets in PDB entry 8DB0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	95	first strand
Strand 2	A	103	108	anti-parallel
Strand 3	A	173	179	anti-parallel
Strand 4	A	184	190	anti-parallel
Strand 5	A	236	243	anti-parallel
Strand 6	A	252	258	anti-parallel
Strand 7	A	316	321	anti-parallel
Strand 8	A	330	335	anti-parallel
Strand 9	A	387	395	anti-parallel
Strand 10	A	398	405	anti-parallel
Strand 11	A	89	95	anti-parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	95	first strand
Strand 2	B	103	108	anti-parallel
Strand 3	B	173	179	anti-parallel
Strand 4	B	184	190	anti-parallel
Strand 5	B	236	243	anti-parallel
Strand 6	B	252	258	anti-parallel
Strand 7	B	316	321	anti-parallel
Strand 8	B	330	336	anti-parallel
Strand 9	B	387	395	anti-parallel
Strand 10	B	398	405	anti-parallel
Strand 11	B	89	95	anti-parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	95	first strand
Strand 2	C	103	108	anti-parallel
Strand 3	C	173	180	anti-parallel
Strand 4	C	183	190	anti-parallel
Strand 5	C	235	243	anti-parallel
Strand 6	C	252	258	anti-parallel
Strand 7	C	316	322	anti-parallel
Strand 8	C	330	336	anti-parallel
Strand 9	C	387	395	anti-parallel
Strand 10	C	398	405	anti-parallel
Strand 11	C	89	95	anti-parallel

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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	94	first strand
Strand 2	D	103	108	anti-parallel
Strand 3	D	173	179	anti-parallel
Strand 4	D	184	190	anti-parallel
Strand 5	D	235	243	anti-parallel
Strand 6	D	252	258	anti-parallel
Strand 7	D	316	321	anti-parallel
Strand 8	D	330	335	anti-parallel
Strand 9	D	387	395	anti-parallel
Strand 10	D	398	405	anti-parallel
Strand 11	D	89	94	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DB0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DB0