Analysis of interatomic Contacts of Structural Units in PDB entry:
8DB3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DB3 entry

There are 2 chains in PDB entry 8DB3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2PRO 463
B
 MET 1LEU 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 8DB3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 17Right-handed alpha
Helix 2
AA2
A
36 53Right-handed alpha
Helix 3
AA3
A
64 74Right-handed alpha
Helix 4
AA4
A
78 85Right-handed alpha
Helix 5
AA5
A
109 123Right-handed alpha
Helix 6
AA6
A
132 137Right-handed alpha
Helix 7
AA7
A
141 160Right-handed alpha
Helix 8
AA8
A
179 184Right-handed alpha
Helix 9
AA9
A
250 257Right-handed alpha
Helix 10
AB1
A
277 293Right-handed alpha
Helix 11
AB2
A
304 314Right-handed alpha
Helix 12
AB3
A
318 325Right-handed alpha
Helix 13
AB4
A
339 355Right-handed alpha
Helix 14
AB5
A
363 367Right-handed 310
Helix 15
AB6
A
373 390Right-handed alpha
Helix 16
AB7
B
10 17Right-handed alpha
Helix 17
AB8
B
36 53Right-handed alpha
Helix 18
AB9
B
64 74Right-handed alpha
Helix 19
AC1
B
78 85Right-handed alpha
Helix 20
AC2
B
109 121Right-handed alpha
Helix 21
AC3
B
132 137Right-handed alpha
Helix 22
AC4
B
141 159Right-handed alpha
Helix 23
AC5
B
179 184Right-handed alpha
Helix 24
AC6
B
250 257Right-handed alpha
Helix 25
AC7
B
277 293Right-handed alpha
Helix 26
AC8
B
304 316Right-handed alpha
Helix 27
AC9
B
318 325Right-handed alpha
Helix 28
AD1
B
334 338Right-handed 310
Helix 29
AD2
B
339 355Right-handed alpha
Helix 30
AD3
B
364 369Right-handed alpha
Helix 31
AD4
B
372 390Right-handed alpha
Helix 32
AD5
B
411 415Right-handed 310
Helix 33
AD6
C
10 17Right-handed alpha
Helix 34
AD7
C
36 53Right-handed alpha
Helix 35
AD8
C
64 74Right-handed alpha
Helix 36
AD9
C
78 85Right-handed alpha
Helix 37
AE1
C
97 101Right-handed 310
Helix 38
AE2
C
108 123Right-handed alpha
Helix 39
AE3
C
132 137Right-handed alpha
Helix 40
AE4
C
141 160Right-handed alpha
Helix 41
AE5
C
179 184Right-handed alpha
Helix 42
AE6
C
250 256Right-handed alpha
Helix 43
AE7
C
277 293Right-handed alpha
Helix 44
AE8
C
304 315Right-handed alpha
Helix 45
AE9
C
318 326Right-handed alpha
Helix 46
AF1
C
339 355Right-handed alpha
Helix 47
AF2
C
363 368Right-handed 310
Helix 48
AF3
C
372 391Right-handed alpha
Helix 49
AF4
C
412 416Right-handed alpha
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There are 11 sheets in PDB entry 8DB3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
21 22anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 92first strand
Strand 2
A
56 60parallel
Strand 3
A
126 130parallel
Strand 4
A
162 168parallel
Strand 5
A
26 31parallel
Strand 6
A
186 195parallel
Strand 7
A
198 208anti-parallel
Strand 8
A
217 223anti-parallel
Strand 9
A
226 229anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
262 263anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 332first strand
Strand 2
A
296 300parallel
Strand 3
A
358 362parallel
Strand 4
A
393 398parallel
Strand 5
A
267 272parallel
Strand 6
A
418 427parallel
Strand 7
A
430 440anti-parallel
Strand 8
A
450 455anti-parallel
Strand 9
A
458 462anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
21 22anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 92first strand
Strand 2
B
56 60parallel
Strand 3
B
126 130parallel
Strand 4
B
162 168parallel
Strand 5
B
26 31parallel
Strand 6
B
186 195parallel
Strand 7
B
198 208anti-parallel
Strand 8
B
217 223anti-parallel
Strand 9
B
226 229anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 246first strand
Strand 2
B
262 263anti-parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 332first strand
Strand 2
B
296 300parallel
Strand 3
B
358 362parallel
Strand 4
B
393 398parallel
Strand 5
B
267 272parallel
Strand 6
B
418 427parallel
Strand 7
B
430 440anti-parallel
Strand 8
B
449 455anti-parallel
Strand 9
B
458 461anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 6first strand
Strand 2
C
21 22anti-parallel
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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 92first strand
Strand 2
C
56 60parallel
Strand 3
C
126 130parallel
Strand 4
C
162 168parallel
Strand 5
C
26 31parallel
Strand 6
C
186 195parallel
Strand 7
C
198 208anti-parallel
Strand 8
C
218 223anti-parallel
Strand 9
C
226 229anti-parallel
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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
328 332first strand
Strand 2
C
296 300parallel
Strand 3
C
358 362parallel
Strand 4
C
393 398parallel
Strand 5
C
267 272parallel
Strand 6
C
418 426parallel
Strand 7
C
431 440anti-parallel
Strand 8
C
450 455anti-parallel
Strand 9
C
458 461anti-parallel
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