Analysis of interatomic Contacts of Structural Units in PDB entry:
8DB7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DB7 entry

There are 4 chains in PDB entry 8DB7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1GLN 304
A
 MET 1GLN 304
C
 MET 1ASP 302
D
 MET 1GLN 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8DB7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
10 23Right-handed alpha
Helix 2
AA2
B
39 55Right-handed alpha
Helix 3
AA3
B
105 117Right-handed alpha
Helix 4
AA4
B
128 138Right-handed alpha
Helix 5
AA5
B
138 143Right-handed alpha
Helix 6
AA6
B
166 172Right-handed alpha
Helix 7
AA7
B
172 183Right-handed alpha
Helix 8
AA8
B
184 186Right-handed 310
Helix 9
AA9
B
192 199Right-handed alpha
Helix 10
AB1
B
214 231Right-handed alpha
Helix 11
AB2
B
237 249Right-handed alpha
Helix 12
AB3
B
289 301Right-handed alpha
Helix 13
AB4
A
10 23Right-handed alpha
Helix 14
AB5
A
39 55Right-handed alpha
Helix 15
AB6
A
76 81Right-handed alpha
Helix 16
AB7
A
89 94Right-handed alpha
Helix 17
AB8
A
105 117Right-handed alpha
Helix 18
AB9
A
128 138Right-handed alpha
Helix 19
AC1
A
138 144Right-handed alpha
Helix 20
AC2
A
167 172Right-handed alpha
Helix 21
AC3
A
172 183Right-handed alpha
Helix 22
AC4
A
184 186Right-handed 310
Helix 23
AC5
A
192 198Right-handed alpha
Helix 24
AC6
A
214 231Right-handed alpha
Helix 25
AC7
A
237 252Right-handed alpha
Helix 26
AC8
A
289 301Right-handed alpha
Helix 27
AC9
C
10 23Right-handed alpha
Helix 28
AD1
C
39 55Right-handed alpha
Helix 29
AD2
C
89 93Right-handed 310
Helix 30
AD3
C
105 117Right-handed alpha
Helix 31
AD4
C
128 138Right-handed alpha
Helix 32
AD5
C
138 143Right-handed alpha
Helix 33
AD6
C
162 166Right-handed 310
Helix 34
AD7
C
167 172Right-handed alpha
Helix 35
AD8
C
172 183Right-handed alpha
Helix 36
AD9
C
184 186Right-handed 310
Helix 37
AE1
C
192 199Right-handed alpha
Helix 38
AE2
C
214 230Right-handed alpha
Helix 39
AE3
C
238 249Right-handed alpha
Helix 40
AE4
C
289 301Right-handed alpha
Helix 41
AE5
D
10 23Right-handed alpha
Helix 42
AE6
D
39 55Right-handed alpha
Helix 43
AE7
D
105 117Right-handed alpha
Helix 44
AE8
D
128 138Right-handed alpha
Helix 45
AE9
D
138 144Right-handed alpha
Helix 46
AF1
D
166 172Right-handed alpha
Helix 47
AF2
D
172 183Right-handed alpha
Helix 48
AF3
D
192 199Right-handed alpha
Helix 49
AF4
D
214 231Right-handed alpha
Helix 50
AF5
D
237 249Right-handed alpha
Helix 51
AF6
D
289 300Right-handed alpha
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There are 8 sheets in PDB entry 8DB7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
27 33parallel
Strand 3
B
2 7parallel
Strand 4
B
120 125parallel
Strand 5
B
147 151parallel
Strand 6
B
188 191parallel
Strand 7
B
282 288parallel
Strand 8
B
253 263anti-parallel
Strand 9
B
273 277anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 202first strand
Strand 2
B
234 235anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
27 33parallel
Strand 3
A
2 7parallel
Strand 4
A
120 124parallel
Strand 5
A
147 151parallel
Strand 6
A
188 191parallel
Strand 7
A
282 288parallel
Strand 8
A
253 263anti-parallel
Strand 9
A
273 277anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
234 235anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 63first strand
Strand 2
C
27 33parallel
Strand 3
C
2 7parallel
Strand 4
C
121 124parallel
Strand 5
C
147 151parallel
Strand 6
C
188 191parallel
Strand 7
C
282 288parallel
Strand 8
C
253 263anti-parallel
Strand 9
C
273 277anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
201 202first strand
Strand 2
C
234 235anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
61 63first strand
Strand 2
D
27 33parallel
Strand 3
D
2 7parallel
Strand 4
D
120 124parallel
Strand 5
D
147 151parallel
Strand 6
D
188 191parallel
Strand 7
D
282 288parallel
Strand 8
D
253 263anti-parallel
Strand 9
D
273 277anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
201 202first strand
Strand 2
D
234 235anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il