Analysis of interatomic Contacts of Structural Units in PDB entry:
8DBE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DBE entry

There are 6 chains in PDB entry 8DBE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	PRO 317
B	PRO 2	PRO 317
C	PRO 2	PRO 317
D	PRO 2	PRO 317
E	PRO 2	PRO 317
F	PRO 2	PRO 317

There are 78 helices in PDB entry 8DBE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	23	Right-handed alpha
Helix 2	AA2	A	62	80	Right-handed alpha
Helix 3	AA3	A	107	120	Right-handed alpha
Helix 4	AA4	A	131	138	Right-handed 310
Helix 5	AA5	A	147	159	Right-handed alpha
Helix 6	AA6	A	161	164	Right-handed 310
Helix 7	AA7	A	171	173	Right-handed 310
Helix 8	AA8	A	174	186	Right-handed alpha
Helix 9	AA9	A	226	239	Right-handed alpha
Helix 10	AB1	A	256	263	Right-handed alpha
Helix 11	AB2	A	277	284	Right-handed alpha
Helix 12	AB3	A	292	306	Right-handed alpha
Helix 13	AB4	A	309	314	Right-handed 310
Helix 14	AB5	B	12	23	Right-handed alpha
Helix 15	AB6	B	62	80	Right-handed alpha
Helix 16	AB7	B	107	120	Right-handed alpha
Helix 17	AB8	B	131	138	Right-handed 310
Helix 18	AB9	B	147	159	Right-handed alpha
Helix 19	AC1	B	161	164	Right-handed 310
Helix 20	AC2	B	171	173	Right-handed 310
Helix 21	AC3	B	174	186	Right-handed alpha
Helix 22	AC4	B	226	239	Right-handed alpha
Helix 23	AC5	B	256	263	Right-handed alpha
Helix 24	AC6	B	277	284	Right-handed alpha
Helix 25	AC7	B	292	306	Right-handed alpha
Helix 26	AC8	B	309	314	Right-handed 310
Helix 27	AC9	C	12	23	Right-handed alpha
Helix 28	AD1	C	62	80	Right-handed alpha
Helix 29	AD2	C	107	120	Right-handed alpha
Helix 30	AD3	C	131	138	Right-handed 310
Helix 31	AD4	C	147	159	Right-handed alpha
Helix 32	AD5	C	161	164	Right-handed 310
Helix 33	AD6	C	171	173	Right-handed 310
Helix 34	AD7	C	174	186	Right-handed alpha
Helix 35	AD8	C	226	239	Right-handed alpha
Helix 36	AD9	C	256	263	Right-handed alpha
Helix 37	AE1	C	277	284	Right-handed alpha
Helix 38	AE2	C	292	306	Right-handed alpha
Helix 39	AE3	C	309	314	Right-handed 310
Helix 40	AE4	D	12	23	Right-handed alpha
Helix 41	AE5	D	62	80	Right-handed alpha
Helix 42	AE6	D	107	120	Right-handed alpha
Helix 43	AE7	D	131	138	Right-handed 310
Helix 44	AE8	D	147	159	Right-handed alpha
Helix 45	AE9	D	161	164	Right-handed 310
Helix 46	AF1	D	171	173	Right-handed 310
Helix 47	AF2	D	174	186	Right-handed alpha
Helix 48	AF3	D	226	239	Right-handed alpha
Helix 49	AF4	D	256	263	Right-handed alpha
Helix 50	AF5	D	277	284	Right-handed alpha
Helix 51	AF6	D	292	306	Right-handed alpha
Helix 52	AF7	D	309	314	Right-handed 310
Helix 53	AF8	E	12	23	Right-handed alpha
Helix 54	AF9	E	62	80	Right-handed alpha
Helix 55	AG1	E	107	120	Right-handed alpha
Helix 56	AG2	E	131	138	Right-handed 310
Helix 57	AG3	E	147	159	Right-handed alpha
Helix 58	AG4	E	161	164	Right-handed 310
Helix 59	AG5	E	171	173	Right-handed 310
Helix 60	AG6	E	174	186	Right-handed alpha
Helix 61	AG7	E	226	239	Right-handed alpha
Helix 62	AG8	E	256	263	Right-handed alpha
Helix 63	AG9	E	277	284	Right-handed alpha
Helix 64	AH1	E	292	306	Right-handed alpha
Helix 65	AH2	E	309	314	Right-handed 310
Helix 66	AH3	F	12	23	Right-handed alpha
Helix 67	AH4	F	62	80	Right-handed alpha
Helix 68	AH5	F	107	120	Right-handed alpha
Helix 69	AH6	F	131	138	Right-handed 310
Helix 70	AH7	F	147	159	Right-handed alpha
Helix 71	AH8	F	161	164	Right-handed 310
Helix 72	AH9	F	171	173	Right-handed 310
Helix 73	AI1	F	174	186	Right-handed alpha
Helix 74	AI2	F	226	239	Right-handed alpha
Helix 75	AI3	F	256	263	Right-handed alpha
Helix 76	AI4	F	277	284	Right-handed alpha
Helix 77	AI5	F	292	306	Right-handed alpha
Helix 78	AI6	F	309	314	Right-handed 310

There are 18 sheets in PDB entry 8DBE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	8	first strand
Strand 2	A	52	56	parallel
Strand 3	A	84	89	parallel
Strand 4	A	123	127	parallel
Strand 5	A	142	145	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	34	first strand
Strand 2	A	40	44	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	208	first strand
Strand 2	A	188	194	anti-parallel
Strand 3	A	166	169	parallel
Strand 4	A	216	223	parallel
Strand 5	A	244	251	parallel
Strand 6	A	266	272	parallel
Strand 7	A	287	290	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	8	first strand
Strand 2	B	52	56	parallel
Strand 3	B	84	89	parallel
Strand 4	B	123	127	parallel
Strand 5	B	142	145	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	34	first strand
Strand 2	B	40	44	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	208	first strand
Strand 2	B	188	194	anti-parallel
Strand 3	B	166	169	parallel
Strand 4	B	216	223	parallel
Strand 5	B	244	251	parallel
Strand 6	B	266	272	parallel
Strand 7	B	287	290	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	8	first strand
Strand 2	C	52	56	parallel
Strand 3	C	84	89	parallel
Strand 4	C	123	127	parallel
Strand 5	C	142	145	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	34	first strand
Strand 2	C	40	44	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	208	first strand
Strand 2	C	188	194	anti-parallel
Strand 3	C	166	169	parallel
Strand 4	C	216	223	parallel
Strand 5	C	244	251	parallel
Strand 6	C	266	272	parallel
Strand 7	C	287	290	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	8	first strand
Strand 2	D	52	56	parallel
Strand 3	D	84	89	parallel
Strand 4	D	123	127	parallel
Strand 5	D	142	145	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	34	first strand
Strand 2	D	40	44	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	205	208	first strand
Strand 2	D	188	194	anti-parallel
Strand 3	D	166	169	parallel
Strand 4	D	216	223	parallel
Strand 5	D	244	251	parallel
Strand 6	D	266	272	parallel
Strand 7	D	287	290	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	8	first strand
Strand 2	E	52	56	parallel
Strand 3	E	84	89	parallel
Strand 4	E	123	127	parallel
Strand 5	E	142	145	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	34	first strand
Strand 2	E	40	44	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	205	208	first strand
Strand 2	E	188	194	anti-parallel
Strand 3	E	166	169	parallel
Strand 4	E	216	223	parallel
Strand 5	E	244	251	parallel
Strand 6	E	266	272	parallel
Strand 7	E	287	290	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	8	first strand
Strand 2	F	52	56	parallel
Strand 3	F	84	89	parallel
Strand 4	F	123	127	parallel
Strand 5	F	142	145	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	34	first strand
Strand 2	F	40	44	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	205	208	first strand
Strand 2	F	188	194	anti-parallel
Strand 3	F	166	169	parallel
Strand 4	F	216	223	parallel
Strand 5	F	244	251	parallel
Strand 6	F	266	272	parallel
Strand 7	F	287	290	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DBE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DBE