Analysis of interatomic Contacts of Structural Units in PDB entry:
8DBM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DBM entry

There are 12 chains in PDB entry 8DBM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	PRO 317
B	PRO 2	PRO 317
C	PRO 2	PRO 317
D	PRO 2	PRO 317
E	PRO 2	PRO 317
F	PRO 2	PRO 317
G	PRO 2	PRO 317
H	PRO 2	PRO 317
I	PRO 2	PRO 317
J	PRO 2	PRO 317
K	PRO 2	PRO 317
L	PRO 2	PRO 317

There are144 helices in PDB entry 8DBM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	23	Right-handed alpha
Helix 2	AA2	A	62	80	Right-handed alpha
Helix 3	AA3	A	107	120	Right-handed alpha
Helix 4	AA4	A	131	138	Right-handed 310
Helix 5	AA5	A	147	159	Right-handed alpha
Helix 6	AA6	A	171	173	Right-handed 310
Helix 7	AA7	A	174	186	Right-handed alpha
Helix 8	AA8	A	226	239	Right-handed alpha
Helix 9	AA9	A	256	264	Right-handed alpha
Helix 10	AB1	A	277	283	Right-handed alpha
Helix 11	AB2	A	292	306	Right-handed alpha
Helix 12	AB3	A	309	315	Right-handed 310
Helix 13	AB4	B	12	23	Right-handed alpha
Helix 14	AB5	B	62	80	Right-handed alpha
Helix 15	AB6	B	107	120	Right-handed alpha
Helix 16	AB7	B	131	138	Right-handed 310
Helix 17	AB8	B	147	159	Right-handed alpha
Helix 18	AB9	B	171	173	Right-handed 310
Helix 19	AC1	B	174	186	Right-handed alpha
Helix 20	AC2	B	226	239	Right-handed alpha
Helix 21	AC3	B	256	264	Right-handed alpha
Helix 22	AC4	B	277	283	Right-handed alpha
Helix 23	AC5	B	292	306	Right-handed alpha
Helix 24	AC6	B	309	315	Right-handed 310
Helix 25	AC7	C	12	23	Right-handed alpha
Helix 26	AC8	C	62	80	Right-handed alpha
Helix 27	AC9	C	107	120	Right-handed alpha
Helix 28	AD1	C	131	138	Right-handed 310
Helix 29	AD2	C	147	159	Right-handed alpha
Helix 30	AD3	C	171	173	Right-handed 310
Helix 31	AD4	C	174	186	Right-handed alpha
Helix 32	AD5	C	226	239	Right-handed alpha
Helix 33	AD6	C	256	264	Right-handed alpha
Helix 34	AD7	C	277	283	Right-handed alpha
Helix 35	AD8	C	292	306	Right-handed alpha
Helix 36	AD9	C	309	315	Right-handed 310
Helix 37	AE1	D	12	23	Right-handed alpha
Helix 38	AE2	D	62	80	Right-handed alpha
Helix 39	AE3	D	107	120	Right-handed alpha
Helix 40	AE4	D	131	138	Right-handed 310
Helix 41	AE5	D	147	159	Right-handed alpha
Helix 42	AE6	D	171	173	Right-handed 310
Helix 43	AE7	D	174	186	Right-handed alpha
Helix 44	AE8	D	226	239	Right-handed alpha
Helix 45	AE9	D	256	264	Right-handed alpha
Helix 46	AF1	D	277	283	Right-handed alpha
Helix 47	AF2	D	292	306	Right-handed alpha
Helix 48	AF3	D	309	315	Right-handed 310
Helix 49	AF4	E	12	23	Right-handed alpha
Helix 50	AF5	E	62	80	Right-handed alpha
Helix 51	AF6	E	107	120	Right-handed alpha
Helix 52	AF7	E	131	138	Right-handed 310
Helix 53	AF8	E	147	159	Right-handed alpha
Helix 54	AF9	E	171	173	Right-handed 310
Helix 55	AG1	E	174	186	Right-handed alpha
Helix 56	AG2	E	226	239	Right-handed alpha
Helix 57	AG3	E	256	264	Right-handed alpha
Helix 58	AG4	E	277	283	Right-handed alpha
Helix 59	AG5	E	292	306	Right-handed alpha
Helix 60	AG6	E	309	315	Right-handed 310
Helix 61	AG7	F	12	23	Right-handed alpha
Helix 62	AG8	F	62	80	Right-handed alpha
Helix 63	AG9	F	107	120	Right-handed alpha
Helix 64	AH1	F	131	138	Right-handed 310
Helix 65	AH2	F	147	159	Right-handed alpha
Helix 66	AH3	F	171	173	Right-handed 310
Helix 67	AH4	F	174	186	Right-handed alpha
Helix 68	AH5	F	226	239	Right-handed alpha
Helix 69	AH6	F	256	264	Right-handed alpha
Helix 70	AH7	F	277	283	Right-handed alpha
Helix 71	AH8	F	292	306	Right-handed alpha
Helix 72	AH9	F	309	315	Right-handed 310
Helix 73	AI1	G	12	23	Right-handed alpha
Helix 74	AI2	G	62	80	Right-handed alpha
Helix 75	AI3	G	107	120	Right-handed alpha
Helix 76	AI4	G	131	138	Right-handed 310
Helix 77	AI5	G	147	159	Right-handed alpha
Helix 78	AI6	G	171	173	Right-handed 310
Helix 79	AI7	G	174	186	Right-handed alpha
Helix 80	AI8	G	226	239	Right-handed alpha
Helix 81	AI9	G	256	264	Right-handed alpha
Helix 82	AJ1	G	277	283	Right-handed alpha
Helix 83	AJ2	G	292	306	Right-handed alpha
Helix 84	AJ3	G	309	315	Right-handed 310
Helix 85	AJ4	H	12	23	Right-handed alpha
Helix 86	AJ5	H	62	80	Right-handed alpha
Helix 87	AJ6	H	107	120	Right-handed alpha
Helix 88	AJ7	H	131	138	Right-handed 310
Helix 89	AJ8	H	147	159	Right-handed alpha
Helix 90	AJ9	H	171	173	Right-handed 310
Helix 91	AK1	H	174	186	Right-handed alpha
Helix 92	AK2	H	226	239	Right-handed alpha
Helix 93	AK3	H	256	264	Right-handed alpha
Helix 94	AK4	H	277	283	Right-handed alpha
Helix 95	AK5	H	292	306	Right-handed alpha
Helix 96	AK6	H	309	315	Right-handed 310
Helix 97	AK7	I	12	23	Right-handed alpha
Helix 98	AK8	I	62	80	Right-handed alpha
Helix 99	AK9	I	107	120	Right-handed alpha
Helix 100	AL1	I	131	138	Right-handed 310
Helix 101	AL2	I	147	159	Right-handed alpha
Helix 102	AL3	I	171	173	Right-handed 310
Helix 103	AL4	I	174	186	Right-handed alpha
Helix 104	AL5	I	226	239	Right-handed alpha
Helix 105	AL6	I	256	264	Right-handed alpha
Helix 106	AL7	I	277	283	Right-handed alpha
Helix 107	AL8	I	292	306	Right-handed alpha
Helix 108	AL9	I	309	315	Right-handed 310
Helix 109	AM1	J	12	23	Right-handed alpha
Helix 110	AM2	J	62	80	Right-handed alpha
Helix 111	AM3	J	107	120	Right-handed alpha
Helix 112	AM4	J	131	138	Right-handed 310
Helix 113	AM5	J	147	159	Right-handed alpha
Helix 114	AM6	J	171	173	Right-handed 310
Helix 115	AM7	J	174	186	Right-handed alpha
Helix 116	AM8	J	226	239	Right-handed alpha
Helix 117	AM9	J	256	264	Right-handed alpha
Helix 118	AN1	J	277	283	Right-handed alpha
Helix 119	AN2	J	292	306	Right-handed alpha
Helix 120	AN3	J	309	315	Right-handed 310
Helix 121	AN4	K	12	23	Right-handed alpha
Helix 122	AN5	K	62	80	Right-handed alpha
Helix 123	AN6	K	107	120	Right-handed alpha
Helix 124	AN7	K	131	138	Right-handed 310
Helix 125	AN8	K	147	159	Right-handed alpha
Helix 126	AN9	K	171	173	Right-handed 310
Helix 127	AO1	K	174	186	Right-handed alpha
Helix 128	AO2	K	226	239	Right-handed alpha
Helix 129	AO3	K	256	264	Right-handed alpha
Helix 130	AO4	K	277	283	Right-handed alpha
Helix 131	AO5	K	292	306	Right-handed alpha
Helix 132	AO6	K	309	315	Right-handed 310
Helix 133	AO7	L	12	23	Right-handed alpha
Helix 134	AO8	L	62	80	Right-handed alpha
Helix 135	AO9	L	107	120	Right-handed alpha
Helix 136	AP1	L	131	138	Right-handed 310
Helix 137	AP2	L	147	159	Right-handed alpha
Helix 138	AP3	L	171	173	Right-handed 310
Helix 139	AP4	L	174	186	Right-handed alpha
Helix 140	AP5	L	226	239	Right-handed alpha
Helix 141	AP6	L	256	264	Right-handed alpha
Helix 142	AP7	L	277	283	Right-handed alpha
Helix 143	AP8	L	292	306	Right-handed alpha
Helix 144	AP9	L	309	315	Right-handed 310

There are 36 sheets in PDB entry 8DBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	8	first strand
Strand 2	A	52	56	parallel
Strand 3	A	84	89	parallel
Strand 4	A	123	127	parallel
Strand 5	A	142	145	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	34	first strand
Strand 2	A	40	44	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	208	first strand
Strand 2	A	188	194	anti-parallel
Strand 3	A	166	169	parallel
Strand 4	A	216	223	parallel
Strand 5	A	244	251	parallel
Strand 6	A	268	272	parallel
Strand 7	A	287	290	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	8	first strand
Strand 2	B	52	56	parallel
Strand 3	B	84	89	parallel
Strand 4	B	123	127	parallel
Strand 5	B	142	145	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	34	first strand
Strand 2	B	40	44	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	208	first strand
Strand 2	B	188	194	anti-parallel
Strand 3	B	166	169	parallel
Strand 4	B	216	223	parallel
Strand 5	B	244	251	parallel
Strand 6	B	268	272	parallel
Strand 7	B	287	290	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	8	first strand
Strand 2	C	52	56	parallel
Strand 3	C	84	89	parallel
Strand 4	C	123	127	parallel
Strand 5	C	142	145	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	34	first strand
Strand 2	C	40	44	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	208	first strand
Strand 2	C	188	194	anti-parallel
Strand 3	C	166	169	parallel
Strand 4	C	216	223	parallel
Strand 5	C	244	251	parallel
Strand 6	C	268	272	parallel
Strand 7	C	287	290	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	8	first strand
Strand 2	D	52	56	parallel
Strand 3	D	84	89	parallel
Strand 4	D	123	127	parallel
Strand 5	D	142	145	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	34	first strand
Strand 2	D	40	44	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	205	208	first strand
Strand 2	D	188	194	anti-parallel
Strand 3	D	166	169	parallel
Strand 4	D	216	223	parallel
Strand 5	D	244	251	parallel
Strand 6	D	268	272	parallel
Strand 7	D	287	290	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	8	first strand
Strand 2	E	52	56	parallel
Strand 3	E	84	89	parallel
Strand 4	E	123	127	parallel
Strand 5	E	142	145	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	34	first strand
Strand 2	E	40	44	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	205	208	first strand
Strand 2	E	188	194	anti-parallel
Strand 3	E	166	169	parallel
Strand 4	E	216	223	parallel
Strand 5	E	244	251	parallel
Strand 6	E	268	272	parallel
Strand 7	E	287	290	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	8	first strand
Strand 2	F	52	56	parallel
Strand 3	F	84	89	parallel
Strand 4	F	123	127	parallel
Strand 5	F	142	145	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	34	first strand
Strand 2	F	40	44	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	205	208	first strand
Strand 2	F	188	194	anti-parallel
Strand 3	F	166	169	parallel
Strand 4	F	216	223	parallel
Strand 5	F	244	251	parallel
Strand 6	F	268	272	parallel
Strand 7	F	287	290	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	8	first strand
Strand 2	G	52	56	parallel
Strand 3	G	84	89	parallel
Strand 4	G	123	127	parallel
Strand 5	G	142	145	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	34	first strand
Strand 2	G	40	44	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	205	208	first strand
Strand 2	G	188	194	anti-parallel
Strand 3	G	166	169	parallel
Strand 4	G	216	223	parallel
Strand 5	G	244	251	parallel
Strand 6	G	268	272	parallel
Strand 7	G	287	290	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	8	first strand
Strand 2	H	52	56	parallel
Strand 3	H	84	89	parallel
Strand 4	H	123	127	parallel
Strand 5	H	142	145	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	34	first strand
Strand 2	H	40	44	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	205	208	first strand
Strand 2	H	188	194	anti-parallel
Strand 3	H	166	169	parallel
Strand 4	H	216	223	parallel
Strand 5	H	244	251	parallel
Strand 6	H	268	272	parallel
Strand 7	H	287	290	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	8	first strand
Strand 2	I	52	56	parallel
Strand 3	I	84	89	parallel
Strand 4	I	123	127	parallel
Strand 5	I	142	145	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	30	34	first strand
Strand 2	I	40	44	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	205	208	first strand
Strand 2	I	188	194	anti-parallel
Strand 3	I	166	169	parallel
Strand 4	I	216	223	parallel
Strand 5	I	244	251	parallel
Strand 6	I	268	272	parallel
Strand 7	I	287	290	parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	8	first strand
Strand 2	J	52	56	parallel
Strand 3	J	84	89	parallel
Strand 4	J	123	127	parallel
Strand 5	J	142	145	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	30	34	first strand
Strand 2	J	40	44	anti-parallel

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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	205	208	first strand
Strand 2	J	188	194	anti-parallel
Strand 3	J	166	169	parallel
Strand 4	J	216	223	parallel
Strand 5	J	244	251	parallel
Strand 6	J	268	272	parallel
Strand 7	J	287	290	parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	8	first strand
Strand 2	K	52	56	parallel
Strand 3	K	84	89	parallel
Strand 4	K	123	127	parallel
Strand 5	K	142	145	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	30	34	first strand
Strand 2	K	40	44	anti-parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	205	208	first strand
Strand 2	K	188	194	anti-parallel
Strand 3	K	166	169	parallel
Strand 4	K	216	223	parallel
Strand 5	K	244	251	parallel
Strand 6	K	268	272	parallel
Strand 7	K	287	290	parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	8	first strand
Strand 2	L	52	56	parallel
Strand 3	L	84	89	parallel
Strand 4	L	123	127	parallel
Strand 5	L	142	145	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	30	34	first strand
Strand 2	L	40	44	anti-parallel

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There are 7 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	205	208	first strand
Strand 2	L	188	194	anti-parallel
Strand 3	L	166	169	parallel
Strand 4	L	216	223	parallel
Strand 5	L	244	251	parallel
Strand 6	L	268	272	parallel
Strand 7	L	287	290	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DBM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DBM