Analysis of interatomic Contacts of Structural Units in PDB entry:
8DBX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DBX entry

There are 4 chains in PDB entry 8DBX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 4	GLU 480
B	SER 2	ARG 523
C	MET 4	GLU 480
D	SER 2	ARG 523

There are103 helices in PDB entry 8DBX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	18	Right-handed alpha
Helix 2	AA2	A	21	30	Right-handed alpha
Helix 3	AA3	A	62	68	Right-handed alpha
Helix 4	AA4	A	86	93	Right-handed alpha
Helix 5	AA5	A	119	126	Right-handed alpha
Helix 6	AA6	A	127	142	Right-handed alpha
Helix 7	AA7	A	153	160	Right-handed alpha
Helix 8	AA8	A	162	175	Right-handed alpha
Helix 9	AA9	A	190	206	Right-handed alpha
Helix 10	AB1	A	207	211	Right-handed 310
Helix 11	AB2	A	233	245	Right-handed alpha
Helix 12	AB3	A	258	265	Right-handed alpha
Helix 13	AB4	A	266	268	Right-handed 310
Helix 14	AB5	A	275	291	Right-handed alpha
Helix 15	AB6	A	301	314	Right-handed alpha
Helix 16	AB7	A	317	347	Right-handed alpha
Helix 17	AB8	A	363	369	Right-handed alpha
Helix 18	AB9	A	383	394	Right-handed alpha
Helix 19	AC1	A	405	417	Right-handed alpha
Helix 20	AC2	A	424	434	Right-handed alpha
Helix 21	AC3	A	443	447	Right-handed 310
Helix 22	AC4	A	451	468	Right-handed alpha
Helix 23	AC5	A	469	474	Right-handed 310
Helix 24	AC6	B	10	15	Right-handed alpha
Helix 25	AC7	B	17	31	Right-handed alpha
Helix 26	AC8	B	36	48	Right-handed alpha
Helix 27	AC9	B	49	58	Right-handed alpha
Helix 28	AD1	B	70	81	Right-handed alpha
Helix 29	AD2	B	92	108	Right-handed alpha
Helix 30	AD3	B	121	126	Right-handed alpha
Helix 31	AD4	B	127	143	Right-handed alpha
Helix 32	AD5	B	152	159	Right-handed alpha
Helix 33	AD6	B	161	172	Right-handed alpha
Helix 34	AD7	B	192	210	Right-handed alpha
Helix 35	AD8	B	211	213	Right-handed 310
Helix 36	AD9	B	233	247	Right-handed alpha
Helix 37	AE1	B	277	284	Right-handed alpha
Helix 38	AE2	B	285	287	Right-handed 310
Helix 39	AE3	B	294	297	Right-handed 310
Helix 40	AE4	B	298	309	Right-handed alpha
Helix 41	AE5	B	322	337	Right-handed alpha
Helix 42	AE6	B	341	363	Right-handed alpha
Helix 43	AE7	B	372	386	Right-handed alpha
Helix 44	AE8	B	399	413	Right-handed alpha
Helix 45	AE9	B	414	417	Right-handed 310
Helix 46	AF1	B	426	437	Right-handed alpha
Helix 47	AF2	B	447	459	Right-handed alpha
Helix 48	AF3	B	460	463	Right-handed 310
Helix 49	AF4	B	478	482	Right-handed 310
Helix 50	AF5	B	485	509	Right-handed alpha
Helix 51	AF6	B	515	519	Right-handed 310
Helix 52	AF7	C	5	19	Right-handed alpha
Helix 53	AF8	C	21	30	Right-handed alpha
Helix 54	AF9	C	62	68	Right-handed alpha
Helix 55	AG1	C	85	93	Right-handed alpha
Helix 56	AG2	C	119	126	Right-handed alpha
Helix 57	AG3	C	127	142	Right-handed alpha
Helix 58	AG4	C	153	159	Right-handed alpha
Helix 59	AG5	C	162	175	Right-handed alpha
Helix 60	AG6	C	190	206	Right-handed alpha
Helix 61	AG7	C	207	210	Right-handed 310
Helix 62	AG8	C	233	245	Right-handed alpha
Helix 63	AG9	C	258	265	Right-handed alpha
Helix 64	AH1	C	266	268	Right-handed 310
Helix 65	AH2	C	275	291	Right-handed alpha
Helix 66	AH3	C	301	314	Right-handed alpha
Helix 67	AH4	C	317	343	Right-handed alpha
Helix 68	AH5	C	363	369	Right-handed alpha
Helix 69	AH6	C	383	392	Right-handed alpha
Helix 70	AH7	C	405	417	Right-handed alpha
Helix 71	AH8	C	424	434	Right-handed alpha
Helix 72	AH9	C	443	447	Right-handed 310
Helix 73	AI1	C	451	468	Right-handed alpha
Helix 74	AI2	C	469	474	Right-handed 310
Helix 75	AI3	D	10	15	Right-handed alpha
Helix 76	AI4	D	17	31	Right-handed alpha
Helix 77	AI5	D	36	48	Right-handed alpha
Helix 78	AI6	D	49	58	Right-handed alpha
Helix 79	AI7	D	70	81	Right-handed alpha
Helix 80	AI8	D	92	108	Right-handed alpha
Helix 81	AI9	D	119	126	Right-handed alpha
Helix 82	AJ1	D	127	143	Right-handed alpha
Helix 83	AJ2	D	152	159	Right-handed alpha
Helix 84	AJ3	D	161	172	Right-handed alpha
Helix 85	AJ4	D	192	210	Right-handed alpha
Helix 86	AJ5	D	211	213	Right-handed 310
Helix 87	AJ6	D	233	247	Right-handed alpha
Helix 88	AJ7	D	259	263	Right-handed 310
Helix 89	AJ8	D	277	284	Right-handed alpha
Helix 90	AJ9	D	285	287	Right-handed 310
Helix 91	AK1	D	294	297	Right-handed 310
Helix 92	AK2	D	298	309	Right-handed alpha
Helix 93	AK3	D	322	337	Right-handed alpha
Helix 94	AK4	D	341	363	Right-handed alpha
Helix 95	AK5	D	372	386	Right-handed alpha
Helix 96	AK6	D	399	412	Right-handed alpha
Helix 97	AK7	D	413	417	Right-handed 310
Helix 98	AK8	D	426	437	Right-handed alpha
Helix 99	AK9	D	447	459	Right-handed alpha
Helix 100	AL1	D	460	463	Right-handed 310
Helix 101	AL2	D	478	482	Right-handed 310
Helix 102	AL3	D	485	509	Right-handed alpha
Helix 103	AL4	D	515	519	Right-handed 310

There are 12 sheets in PDB entry 8DBX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	399	402	anti-parallel
Strand 3	A	374	379	parallel
Strand 4	A	351	355	parallel
Strand 5	A	420	423	parallel
Strand 6	A	438	440	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	181	first strand
Strand 2	A	148	152	parallel
Strand 3	A	79	83	parallel
Strand 4	A	114	115	parallel
Strand 5	B	63	64	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	254	first strand
Strand 2	A	222	228	parallel
Strand 3	A	270	273	parallel
Strand 4	A	294	296	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	115	first strand
Strand 2	B	85	90	parallel
Strand 3	B	146	151	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	253	first strand
Strand 2	B	224	227	parallel
Strand 3	B	289	292	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	423	first strand
Strand 2	B	389	395	parallel
Strand 3	B	366	370	parallel
Strand 4	B	441	444	parallel
Strand 5	B	466	468	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	34	first strand
Strand 2	C	399	402	anti-parallel
Strand 3	C	374	379	parallel
Strand 4	C	351	353	parallel
Strand 5	C	420	423	parallel
Strand 6	C	438	440	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	181	first strand
Strand 2	C	148	152	parallel
Strand 3	C	79	83	parallel
Strand 4	C	114	115	parallel
Strand 5	D	63	64	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	254	first strand
Strand 2	C	222	228	parallel
Strand 3	C	270	273	parallel
Strand 4	C	294	296	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	115	first strand
Strand 2	D	85	90	parallel
Strand 3	D	146	151	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	253	first strand
Strand 2	D	224	227	parallel
Strand 3	D	289	292	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	420	423	first strand
Strand 2	D	389	395	parallel
Strand 3	D	366	370	parallel
Strand 4	D	441	444	parallel
Strand 5	D	466	468	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DBX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DBX