Analysis of interatomic Contacts of Structural Units in PDB entry:
8DC1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DC1 entry

There is 1 chain in PDB entry 8DC1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 57LEU 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 8DC1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 72Right-handed 310
Helix 2
AA2
A
75 88Right-handed alpha
Helix 3
AA3
A
122 138Right-handed alpha
Helix 4
AA4
A
147 156Right-handed alpha
Helix 5
AA5
A
159 164Right-handed alpha
Helix 6
AA6
A
170 176Right-handed alpha
Helix 7
AA7
A
182 186Right-handed 310
Helix 8
AA8
A
188 194Right-handed 310
Helix 9
AA9
A
197 204Right-handed alpha
Helix 10
AB1
A
218 234Right-handed alpha
Helix 11
AB2
A
236 244Right-handed alpha
Helix 12
AB3
A
244 249Right-handed alpha
Helix 13
AB4
A
273 286Right-handed alpha
Helix 14
AB5
A
297 305Right-handed alpha
Helix 15
AB6
A
342 344Right-handed 310
Helix 16
AB7
A
359 376Right-handed alpha
Helix 17
AB8
A
382 398Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 8DC1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
102 108parallel
Strand 3
A
92 99anti-parallel
Strand 4
A
346 352anti-parallel
Strand 5
A
336 341anti-parallel
Strand 6
A
325 332anti-parallel
Strand 7
A
318 322anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
270 272anti-parallel
Strand 3
A
255 256anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 290first strand
Strand 2
A
293 294anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il